Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq139 199 9e-46 seq151 190 5e-43 >seq139 Length=542781 Score = 199 bits (220), Expect = 9e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || | ||||| ||| || || || || ||||| ||||| ||||||||| Sbjct 271506 CCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 271447 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||||||||| ||||| | ||| ||||||||||| || || | ||||||||||||||| Sbjct 271446 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 271387 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || |||||||| |||||||| |||||||| || | |||||| |||||| || Sbjct 271386 ATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACT 271327 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || | ||| || ||||| || || | ||||| ||||| || ||||| || Sbjct 271326 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 271277 >seq151 Length=91942 Score = 190 bits (210), Expect = 5e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| | ||||| |||||| ||||| ||||| ||||| || |||||| Sbjct 55387 ATACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCA 55328 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| || |||| ||||||||| ||||| || | | ||||||||||| Sbjct 55327 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 55268 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || ||||| ||||||||||| || ||||| || | ||||| |||||| Sbjct 55267 GGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 55208 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || |||||||| || || | || || ||||| |||||||| Sbjct 55207 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 55158 Score = 179 bits (198), Expect = 9e-40 Identities = 182/236 (77%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | |||| ||||| || || ||||| ||||| || || ||| Sbjct 55159 ATACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 55100 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| || |||| ||||||||| ||||| || | | ||||||||||| Sbjct 55099 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 55040 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||||||||||||||| || ||||| || | ||||| |||||| Sbjct 55039 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 54980 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTGT 104564 || || | || |||||||| || || | || || ||||| |||||||| ||||| Sbjct 54979 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTGT 54924 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || || | |||| ||||| || || ||||| ||||| || || ||| Sbjct 55615 ATTCCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 55556 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| || |||| ||||||||| ||||| || | | ||||||||||| Sbjct 55555 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 55496 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||||||||||||||| || ||||| || | ||||| |||||| Sbjct 55495 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 55436 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || |||||||| || || | || || || || |||||||| Sbjct 55435 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 55386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396098642448