Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq15 145 8e-30 >seq15 Length=98471 Score = 145 bits (160), Expect = 8e-30 Identities = 557/863 (65%), Gaps = 27/863 (3%) Strand=Plus/Plus Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| |||| |||||| |||||||| || || || || |||| | ||| ||| | Sbjct 53187 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 53246 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATA 21305 |||| ||||||| ||||| | || | ||||| | | ||| | | | || Sbjct 53247 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 53306 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 ||||||| || |||||||| |||||||| ||| | | | |||||||| || | | Sbjct 53307 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGAT 53366 Query 21366 TTACAGGAAGAGCTTTTGTCAAA-AAAGATT-TTTCTATAGAGACGGCTTCAACAATTAT 21423 |||||||||| | |||| |||| || |||| | || ||||| || || Sbjct 53367 CAACAGGAAGAGAGTCA--CAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 53424 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAA---TAATTG-TTTAAACATCAAACATG 21479 | | || |||| | || || || || ||| | |||| | || ||||| | Sbjct 53425 TTGTTGTACTCTAGGAG--CT--GGTAATTTAAATTTAAGGGCTTTATATATTAAACAAG 53480 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||| ||| ||| | ||||||||| | ||| || | ||||||||||||||| | || | Sbjct 53481 CAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAG 53540 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATG 21598 |||| | ||| | ||||| | |||||| |||| | |||| ||| || ||||| | ||| Sbjct 53541 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTG-CACAAAAGCTACCAGAAAATAGAATT 53599 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT--A 21656 || ||||| ||| ||| ||| | || |||| | | |||| || | ||| | Sbjct 53600 CCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAA---AGATCGTTCA--GAATTCA 53654 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716 ||||||| |||||||| ||| || | ||||| | ||||| | ||| || || Sbjct 53655 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGC--TTC 53712 Query 21717 AAAGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 ||||| |||| ||| | | ||| || || ||| | Sbjct 53713 AAAGAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGT 53772 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 |||| |||||| | ||| || | || ||||| | ||| | ||| || |||| Sbjct 53773 TTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTAT 53832 Query 21835 TTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||| | || || |||| | || |||||||| | || || |||||||| || | Sbjct 53833 TTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAG 53891 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT 21953 |||| ||||| || | | ||| ||||||| || ||| ||| | | ||| ||||| Sbjct 53892 CAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAAT 53951 Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTT 22013 || ||||| || ||| | |||||||| |||||| || ||| |||| Sbjct 53952 CTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTT 54011 Query 22014 TATACATAATCCAGATATCATTA 22036 ||||||| ||| ||||| ||| Sbjct 54012 TATACATTGACCAAATATCTTTA 54034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531899762793440