Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq139 109 4e-19 >seq139 Length=542781 Score = 109 bits (120), Expect = 4e-19 Identities = 170/240 (71%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 16702 CATTTAC-CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || |||| || |||| || |||| ||| | ||||| ||||||||||| || || |||| Sbjct 271514 CAATTACACCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGT 271455 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||| | | ||| | | || |||||||| || || ||| | || || |||||||| | Sbjct 271454 AGTCAGATAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGAT 271395 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | ||| | |||||| || || || ||||| ||| || | | | ||| ||| Sbjct 271394 CAGGAGGAATGCCCTCCTTATCCTGGATCTTTGC--CTTTACATTCTCAATAGTATCGGA 271337 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || ||||| |||||||| ||||| || | |||||||||||||| ||||| || Sbjct 271336 AGGTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 271277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087229826440