Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq153 168 8e-37 >seq153 Length=380987 Score = 168 bits (186), Expect = 8e-37 Identities = 1115/1757 (63%), Gaps = 62/1757 (4%) Strand=Plus/Plus Query 111604 TGGAAACCCCACAGTACATGTTC--ATGCGGGTCGCGATCGGTATCCATGGGGAAGATAT 111661 |||||| ||||| |||| ||| |||||||| | ||||| ||| | | ||||| Sbjct 232196 TGGAAAGACCACA--ACATCTTCTGATGCGGGTTTCTTGTGGTATTCATTGTGGTGATAT 232253 Query 111662 TGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGG-TATGTTCATCCACGCAACAC 111720 ||| ||| | || ||||| || | | || | ||| || || | ||||||| Sbjct 232254 TGAAGCTGCACTTGAAACATATGAGTTGTTATCGCAAAAATATTTTACTC-ATGCAACAC 232312 Query 111721 CAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATT--GC 111778 | || ||||| || | || || || |||| |||||||| |||||| ||| | | Sbjct 232313 CCACACTCTTTAATTCAGGCACGCCGCGACCTCAAATGTCATCTTGTTTT-TTACTCAGG 232371 Query 111779 AAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTC 111838 | | || || ||||||| || || || | | ||| || ||| |||| || | || Sbjct 232372 ATTCCAGAAG-ATTCAATAAACGGTATCTTTGACACACTAACTAAATGCGCAAACATTAG 232430 Query 111839 AAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTA 111897 ||| || ||||| | ||| || | | || | |||| ||| || | || Sbjct 232431 TAAGACTGCAGGTGGCCTTGGGGTGGCAGTAAGTAATATTAGAGG-AACTGGTTCATATA 232489 Query 111898 TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 111957 || |||| |||||||| ||| |||| | ||||| ||||| ||||| | ||| | || Sbjct 232490 TTCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTTTATAATGACA 232549 Query 111958 CAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTG 112014 | || | ||| | | |||| ||| | || || || | || ||| | ||| | | Sbjct 232550 CTGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCAATTTATTTGG 232609 Query 112015 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGG 112074 | |||||||||| ||| | | ||||| |||| | | || || || | || | Sbjct 232610 AACCATGGCACGTTGATGTTGTAGAGTTTATTGAAATTAGGAAGAATCATGGAAAGGAAG 232669 Query 112075 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134 || | | || ||||||||||| | || || ||| |||| ||||| |||||| | |||| Sbjct 232670 AGATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTTCATGGAAAGAG 232729 Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAGGCACCCGGTCTCTCCGAT 112193 ||||| || | ||||| |||| | || ||||| || ||| || | ||| Sbjct 232730 TTGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGGGATTGCAAGAT 232788 Query 112194 GCCGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA 112251 | ||| || || ||| |||| || || | |||| ||| || || | || | | Sbjct 232789 GTTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACAAGGCCGTGGAA 232846 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCA-AGTCTCAAACCGAGACT 112310 ||| || ||| || || | | || ||| | || |||||| ||||| Sbjct 232847 GGAAAACGATGAAAGC-GCAGAAACTTTGGTTCTTAATCTTACAGGCTCAAATTGAGACG 232905 Query 112311 GGTACACCATATATGCTTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTT 112369 || ||||||| ||| ||| ||||| | ||| || | || ||||| || || ||||| Sbjct 232906 GGGACACCATTTATTTGTTATAAAGATG-CTGCAAATAGCAAAAGTAACCAGAAAAATTT 232964 Query 112370 GGGTGTGATCAAGAGTTCC----AACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 112425 || || | | ||| | ||| | || ||||||||| | |||| || ||| | Sbjct 232965 GG----GAACTATTGTTTCAAGTAACTTATGCACAGAAATCATAGAATACACTAGCAAGG 233020 Query 112426 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 112485 | || || || ||||| || || || || | || || |||| || ||| | | | Sbjct 233021 ACGAAGTTGCCGTTTGTAATCTGGCGTCTATTGGCCTTCCAAAGTTCGTTGATAAAAATA 233080 Query 112486 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAA 112545 ||||| ||||||| ||| || | | ||||||||||| | || | || | | Sbjct 233081 ACAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTACGAGGAATTTGA 233140 Query 112546 ACAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGA 112602 | | | | ||||| | || ||| || | | | ||| || | || || ||| | | Sbjct 233141 ATAAATTGATTGACGTTGGATATTATT--CTCTTAAAGAATG-TACAAACTCGAATTTAA 233197 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA-TGTATTCATTCTTTGTCGC 112661 |||| |||||| | || | || | ||||| ||||| || ||| ||||| | ||| Sbjct 233198 GACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGT-TTCATGATGCTTCGT 233256 Query 112662 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTAT 112721 ||| || || || | ||| ||| | | ||| | || ||||| || ||| Sbjct 233257 ATGCCATACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATCTTTGAAGTTATCTAT 233316 Query 112722 CACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 112781 | || ||||| || || || | ||| | ||||| |||||||||| ||||| | | Sbjct 233317 TATGCAGCTCTCGATGCTAGCTGTGAGCTTGCAGAAAAATATGGTCCATACGAAACATAT 233376 Query 112782 GAGGGTTCTCCAGCTTCACAAGGGGTGCTT--CAATTTGATATGTGGGAAGGTGAGACCA 112839 ||||| || || | | |||| || |||||||||||||||| | || | |||| Sbjct 233377 TCCGGTTCGCCTGC--GAGTAAGGGTATTTTACAATTTGATATGTGGGGA-GTTACACCA 233433 Query 112840 AGCT----TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 112895 || | | || ||||| | || || || | || | | ||| ||||| Sbjct 233434 GACTCTGGACTTTGTGATTGGGATTCGCTTAAAGATAGGATTTCCAAATATGGTATTCGT 233493 Query 112896 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 112955 || ||| ||||| | |||||||||||||| ||||| ||||||| || ||||| ||| Sbjct 233494 AATTCTCTATTGATATCTCCAATGCCAACAGCATCCACTTCACAAATTTTAGGTAACAAT 233553 Query 112956 GAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 113015 || | ||||| || | ||| ||||||| |||| | || || | || ||||| Sbjct 233554 GAGAGTTTTGAGCCATTCACCTCGAACATTTATCATCGTAGGGTACTATCTGGTGAGTTC 233613 Query 113016 GTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGG--TCCAAGG 113073 | | || || ||| | | |||| | |||| |||| | ||| | ||| Sbjct 233614 TTTGTAGTAAATCCGCACTTGCTAAATGATTTACTAGAGCTTGGGTTATGGGATGATAGG 233673 Query 113074 -ATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCA 113132 || | || || | || | || || || ||||||||||| | ||||| Sbjct 233674 CTTAAGCAGAATATTATTGCAAATAATGGCAGT---ATTCAAAATATACTTACAATTCCG 233730 Query 113133 GATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGAC 113192 || || || || | || || || |||||||||||| ||| || ||||| Sbjct 233731 GAGGATATACGTGAGCTTTATAAGACTGTATGGGAAATCAAGCAAAAGACAGTAATTGAT 233790 Query 113193 ATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA--ATCTATTCATGG 113250 ||||| |||||| | |||| | || |||| ||| | ||| ||| || |||| Sbjct 233791 ATGGCTGCAGATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGAACATCCAT--ATGG 233848 Query 113251 AAAGT-CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTC 113309 ||| | | ||| || | ||| | || |||||||| | || ||||||| || ||||| Sbjct 233849 AAAATGCTAACTTTG-CAAAGTTATCATCTATGCATTTTTATGGTTGGAAAAAAGGTCTA 233907 Query 113310 AAAACGGGGATGTATTA 113326 ||||| || || ||||| Sbjct 233908 AAAACAGGCATTTATTA 233924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741189552320