Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq153 149 7e-31 >seq153 Length=380987 Score = 149 bits (164), Expect = 7e-31 Identities = 832/1304 (64%), Gaps = 42/1304 (3%) Strand=Plus/Minus Query 105933 GATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 105992 |||| ||||||| ||| | || ||||| | ||||| ||||| || ||||||| |||| Sbjct 233587 GATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGG 233528 Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 | |||||||||||||| | ||||| ||| ||||||| ||| | || || | | Sbjct 233527 ATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATACCATATTTGGAAATCCTAT 233468 Query 106053 CCTTGAGAACATCCCAGT--CGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAAT 106108 | || || |||||| | | ||| ||| |||| | | || |||||||||||||| Sbjct 233467 CTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGT-AACTCCCCACATATCAAAT 233409 Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168 || | | || | || || ||||| | |||| || || | ||| | ||| Sbjct 233408 TGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCT 233349 Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 || | |||||||| || || || | ||| | ||| || ||||||||| | ||| Sbjct 233348 GCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTT 233289 Query 106229 ATCTCCTTGGCTTCATCTGAATCAAAT-GCGTAGCGGCACAAAATAAATACA-TCCGCGA 106286 | || ||| ||| | || || || || || || || || || || ||| || |||| Sbjct 233288 AACTTCTTAGCTCCCTCAGACTCGTATGGCATA-CGAAGCATCATGAA-ACAGTCTGCGA 233231 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 106346 | ||||||| || | || | || | |||| | ||| || ||| | || ||| | Sbjct 233230 GCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTCGAGTTT-GTACATTCTTTA 233172 Query 106347 CGGGATAAAAATTTC---TGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 106403 || || ||| || |||||| | | || | ||| | |||| | ||| || | Sbjct 233171 --AGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAA 233114 Query 106404 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 106463 ||| | | || ||| ||||||| || | | || || || ||||||||||| Sbjct 233113 CTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGC 233054 Query 106464 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 106523 | || || |||| ||| ||||| || || ||||| ||||| |||| ||||||| Sbjct 233053 CAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGCTAGTGTATTCTATGATTTCTG 232994 Query 106524 TACACAAG----TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT-TTTGTT 106578 | || ||| ||| ||| ||| || |||||||| || |||||||| || | || Sbjct 232993 TGCATAAGTTACTTGAAAC----AATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTT 232938 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 ||| ||||| || || || | || ||||||||||| | || | || | ||| Sbjct 232937 GCA-GCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAA 232879 Query 106639 CTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 106697 ||| | || ||| | | | | || | || || | ||| |||| | Sbjct 232878 GAACCAAAGTTTCTGCGCTTTCATCGTTTTCCTT-CCACGGCCTTGTTTCTCATACTCTT 232820 Query 106698 TGTAGAGGGCTTC--AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTG 106754 || | ||||| ||| || || ||| | || | | | ||| || |||| Sbjct 232819 CATATA--GCTTCTTAAAATCATCGCCCCAAACATC-TTGCAATCCCCTGCATTCATCTG 232763 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | || | |||| ||| | | ||| |||||| | | |||||| || || |||| || Sbjct 232762 GGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCC 232703 Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-C 106873 | |||| | ||||||||| | ||| | |||||| | || || || || ||| Sbjct 232702 AAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCATGATT-CTTCCTAATT 232644 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 106933 |||| ||||| | | ||| |||||||||| || | ||| | ||| || | || || Sbjct 232643 TCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTA 232584 Query 106934 CG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990 || | ||| |||||| | ||| | || ||| | ||| | ||||| ||||| ||| Sbjct 232583 CGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGA 232524 Query 106991 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 107050 || | |||| ||| |||||||| || |||||| || | | |||| | || | Sbjct 232523 ATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTA 232464 Query 107051 TGGATGTGCATCCCAATACCCCCAGCCCACTT--TGAGATTTGCGCACACTCCGTAAGAG 107108 | || ||||| || || || ||| | | |||||| || | || || | Sbjct 232463 CTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCG--CATTTAGTTAGTG 232406 Query 107109 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 107168 | || |||||||||| ||||| || || | || | || ||| ||||| | Sbjct 232405 TGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTT 232346 Query 107169 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 107212 | |||| || || || | ||| ||||| || |||||||| ||| Sbjct 232345 GAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGA 232302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979649537440