Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq153 280 2e-70 seq15 228 9e-55 >seq153 Length=380987 Score = 280 bits (310), Expect = 2e-70 Identities = 715/1075 (67%), Gaps = 26/1075 (2%) Strand=Plus/Minus Query 47825 AATTTCTCTTAATTTATTAAAATCAAAC---TTGTTATTTATAACAA---ACCTATTAAG 47878 || |||| |||| |||| |||||||||| ||||||||| || ||| || | ||| Sbjct 233115 AACTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAG 233056 Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATT 47936 | ||||| || |||||||| || || || || | ||| |||| |||| ||| ||| Sbjct 233055 GCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC--TAGTGTATTCTATGATT 232998 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA-TTNNNNTTGTT 47995 || | |||| |||| | ||||| |||||||||| || ||| || | || Sbjct 232997 TCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTT 232938 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 || || || || ||| ||||| ||||| || || || || |||| | | ||| | Sbjct 232937 GCA-GCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAA 232879 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTT---CGTATTT 48112 ||||| || || || || | | | | | | |||| | || | Sbjct 232878 GAACCAAAGTTTCTGCGCTTTCATC---GTTTTCCTTCCACGGCCTTGTTTCTCATACTC 232822 Query 48113 AGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172 ||||| ||||| ||| ||||| || | |||| | || || ||||||| || Sbjct 232821 TTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGG 232762 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 ||||| | | |||||| | ||| || | ||||| ||| || | ||| || | ||| Sbjct 232761 GCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCA 232702 Query 48233 AAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTC 48292 ||| || ||| | ||| | | ||| | ||||| || ||| |||| | ||| ||| Sbjct 232701 AAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTC 232642 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCG 48352 || ||| || | | |||| | ||||||||||| ||||| ||||| || ||||| || Sbjct 232641 AATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACG 232582 Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 || || |||||||| ||||| || ||||| | |||||||| | | ||| || | Sbjct 232581 CTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAAT 232522 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472 | ||||| ||| | ||||| ||||| |||||| ||| | |||| |||||||| Sbjct 232521 TAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACT 232462 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTA--GATATTAGAGCACACCGTTTAAGGGTA 48530 | || | || | |||||||| | ||| || || | ||| ||| || || Sbjct 232461 TACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTG 232404 Query 48531 TCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGC 48590 ||| | || || | ||| ||| ||| || | | || ||||||| |||||||| Sbjct 232403 TCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGA 232344 Query 48591 GGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGAT 48650 || | || ||||||||||| | ||| || | ||||||| |||| |||| | ||| Sbjct 232343 GGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGAT 232284 Query 48651 AACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACA 48710 ||||| | ||||||||||| ||| || ||||| | ||| ||||| ||| || Sbjct 232283 AACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGAATACCACAAGAAACC 232224 Query 48711 CGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGAT 48770 ||||| | | || ||| |||||||| |||| |||||| | ||||| | |||||| ||| Sbjct 232223 CGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGAT 232164 Query 48771 TTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAAT-AATTGA 48829 |||| | ||||| || ||||||| | ||| ||| || || | | ||| |||| Sbjct 232163 CTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATC-TTTTGAAAAATCAATTTT 232105 Query 48830 TGAATTTATTCTTTCCTTATGTTTATATACTACATCCAT-TACATTTTTTGATAT 48883 |||||| |||||||| ||| ||| || || | ||| |||| |||||| || Sbjct 232104 TGAATTAATTCTTTCTCTAT-TTTCCATGATAAAATCATAAACATGTTTTGAAAT 232051 >seq15 Length=98471 Score = 228 bits (252), Expect = 9e-55 Identities = 584/871 (67%), Gaps = 51/871 (6%) Strand=Plus/Plus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| ||||||| ||||| ||||| |||||||| || | | ||| ||| | Sbjct 53187 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 53246 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTCTAATAGT 18789 |||| ||||||| ||||| || || || |||||| | |||| || | || ||| Sbjct 53247 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCC-AAGGCAAAAAGT 53305 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| ||||||| | ||| | | ||||| || || | Sbjct 53306 AATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGA 53365 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | |||||| || | || |||||| | | ||| | | || || |||||||| || Sbjct 53366 TCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATT 53425 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAG--AAGATGTTTAAACATCAAACATGCAA 18967 | |||||| | | | | || | ||| |||| | || ||||| |||| Sbjct 53426 TGTTGTACTCTAGGAGC--TGGTAATTTAAATTTAAGGGCTTTATATATTAAACAAGCAA 53483 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||| ||| || || || || | ||| || | ||||||||||||||| | ||||||| Sbjct 53484 AGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCA 53543 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCT 19086 | ||||| | |||||| | ||| || || | | |||| | | |||||||| | || ||| Sbjct 53544 TAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAATTCCT 53602 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT-ATTATGAATCCA 19145 || || || || ||| | |||||| || || ||| || | || ||||| Sbjct 53603 TCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAG----ATCGTTCAGAATTCATCCA 53658 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 ||| |||||| || || |||||||| ||| | || ||| | |||| | Sbjct 53659 TTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCT---------TCAATATGAG-AAATTG 53708 Query 19206 ATACATACGCTCATCTGTA--TCTTTAACAT-----ATGCATCTATCAATAA--ACTGTA 19256 | || | | ||| || ||||||| || || |||||||||||| | || | Sbjct 53709 CTTCAAA-GAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAA 53767 Query 19257 CA--TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 | |||| ||| || | ||| |||| ||| ||||| | ||| | ||| |||||| Sbjct 53768 TAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCT 53827 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | ||| |||| ||| ||| || || | | || ||||| |||| || |||||||| Sbjct 53828 GGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTT 53887 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA---TCTGAGGTTAATGTA 19431 || ||||| |||||||| || | ||| ||||||||| ||||| ||| |||| Sbjct 53888 GCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCT----TTAAGACT 53943 Query 19432 TTCC-AATCATTAATATCTT----TAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 |||| |||| || |||||| ||||| ||||| |||| ||| |||||| || | Sbjct 53944 TTCCCAATCTCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATG 53999 Query 19487 CCTCTGCTTTTTTATACATGTTCCATATATC 19517 | || |||||||||||||| ||| ||||| Sbjct 54000 CTTCAGCTTTTTTATACATTGACCAAATATC 54030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107703887840