Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq153 154 2e-32 >seq153 Length=380987 Score = 154 bits (170), Expect = 2e-32 Identities = 1054/1652 (64%), Gaps = 62/1652 (4%) Strand=Plus/Plus Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTT 75369 ||| |||||||| || ||||| ||| | || || || |||| || ||||| ||| || Sbjct 232302 TCATGCAACACCCACACTCTTTAATTCAGGCACGCCGCGACCTCAAATGTCATCTTGTTT 232361 Query 75370 CCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGC 75429 | || | || || ||||| |||||||||| || || || || | || | Sbjct 232362 TTTACTCAGGATTCCAGAAGATTCAATAAACGGTATCTTTGACACACTAACTAAATG--C 232419 Query 75430 GCAAATCTCA--AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 ||||| | | ||| || || || ||||| || | | || | |||| | | Sbjct 232420 GCAAACATTAGTAAGACTGCAGGTGGCCTTGGGGTGGCAGTAAGTAATATTAGAGGAACT 232479 Query 75488 AAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 75547 || |||||| || |||||||| ||| |||| | ||||| ||||| ||||| Sbjct 232480 GGTTCATATATTCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTT 232539 Query 75548 TTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCG 75604 | ||| | ||| || | ||| | |||||| || | || || || |||| || Sbjct 232540 TATAATGACACTGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCA 232599 Query 75605 GTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTG-AGTTACGACTCAACCA 75663 | || |||||||||||||| | ||| | | ||||| ||| | ||| || || || Sbjct 232600 ATTTATTTGGAACCATGGCACGTTGATGTTGTAGAGTTTATTGAAATTAGGA-AGAATCA 232658 Query 75664 AGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTT 75723 || | |||||| | ||| | ||||||||| | |||| ||| |||| || || || Sbjct 232659 TGGAAAGGAAGAGATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTT 232718 Query 75724 CATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGA-CAAGGCACCAG 75782 |||| | | |||||| ||| | | ||| |||| | || ||||| || ||| | Sbjct 232719 CATGGAAAGAGTTGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGG 232777 Query 75783 GTCTCTCCGACGCGGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTATGA-AGAGG 75839 | | || | ||| || || ||| |||| || || | ||||||| | | Sbjct 232778 GATTGCAAGATGTTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACA 232835 Query 75840 AGG--GTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCA-AAT 75896 ||| || || || ||| || | || ||| || || | || ||| | | Sbjct 232836 AGGCCGTGGAAGGAAAACGA-TGAA--AG-CGCAGAAACTTTGGTTCTTAATCTTACAGG 232891 Query 75897 CACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTA 75956 | || | ||||| || ||||||| ||| ||| || |||||| || | || |||| Sbjct 232892 CTCAAATTGAGACGGGGACACCATTTATTTGTTATAAAGATGCTGCAAATAGCAAAAGTA 232951 Query 75957 ACCAAAAGAATTTGGGAACAATCAAGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGT 76013 |||| || ||||||||||| || |||| | ||| ||||| ||||| |||| | Sbjct 232952 ACCAGAAAAATTTGGGAACTAT---TGTTTCAAGTAACTTATGCACAGAAATCATAGAAT 233008 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 |||| ||||| || || ||||| ||| |||| || || | ||||||||||| | Sbjct 233009 ACACTAGCAAGGACGAAGTTGCCGTTTGTAATCTGGCGTCTATTGGCCTTCCAAAGTTCG 233068 Query 76074 TCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTA 76133 | || || | | || ||||||| ||| || | | ||| | || ||| | ||| Sbjct 233069 TTGATAAAAATAACAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTA 233128 Query 76134 CCAAAAATCTAAACCGAGTCATTGAC---AGAAATTTTTATCCCGTTGAGACTGCGCGAA 76190 | | ||| | || | | |||||| || ||| | || | | ||| || | || Sbjct 233129 CGAGGAATTTGAATAAATTGATTGACGTTGGATATTAT--TCTCTTAAAGAATGTAC-AA 233185 Query 76191 AGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGA-TGTATTT 76249 | || ||| | |||| | || | || | || ||||||| ||||| || ||| || Sbjct 233186 ACTCGAATTTAAGACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGT-TTC 233244 Query 76250 ATTTTGTGCCGCTACG-CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308 || || || || | ||| || || || | ||| ||| || | ||| | ||||| Sbjct 233245 ATGATGCTTCG-TATGCCATACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATCTT 233303 Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTC 76368 |||| || ||| | ||| | || || || || ||||| | || ||| | ||| | Sbjct 233304 TGAAGTTATCTATTATGCAGCTCTCGATGCTAGCTGTGAGCTTGCAGAAAAATATGGTCC 233363 Query 76369 CTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGA 76428 || || |||| | ||||| || ||| | || | | || ||||||||||||| Sbjct 233364 ATACGAAACATATTCCGGTTCGCCTGCGAGTAAGGGTATTTTACAATTTGATATGTGGGG 233423 Query 76429 AGGTGAAACCAAGCTC--AAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGA 76484 | || | |||| ||| || | || |||||| || || || | || | Sbjct 233424 A-GTTACACCAGACTCTGGACTTTGTGATTGGGATTCGCTTAAAGATAGGATTTCCAAAT 233482 Query 76485 AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCT 76544 | ||| ||||||| ||| ||||| | |||||||||||||| ||||| ||||||| | Sbjct 233483 ATGGTATTCGTAATTCTCTATTGATATCTCCAATGCCAACAGCATCCACTTCACAAATTT 233542 Query 76545 TGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCG 76604 | ||||| ||||| | ||||| |||| ||| | ||||| || | | || || Sbjct 233543 TAGGTAACAATGAGAGTTTTGAGCCATTCACCTCGAACATTTATCATCGTAGGGTACTAT 233602 Query 76605 CAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCT-CAAGAAGATTGGTCTC 76663 | |||||||| | | || || |||| | | ||||| | | || || |||| | Sbjct 233603 CTGGTGAGTTCTTTGTAGTAAATCCGCACTTGCTAAATGATTTACTAG-AGCTTGGGTTA 233661 Query 76664 TGG--TCCAAGG-ATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATAT- 76719 ||| | ||| || | || || | || | || || || ||||||||||| Sbjct 233662 TGGGATGATAGGCTTAAGCAGAATATTATTGCAAATAATGGCAGT---ATTCAAAATATA 233718 Query 76720 CTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAA 76779 || | | || || || ||||| | || || || || |||||||||||| || Sbjct 233719 CTTACA-ATTCCGGAGGATATACGTGAGCTTTATAAGACTGTATGGGAAATCAAG-CAAA 233776 Query 76780 AGA-TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA 76838 ||| || ||||| ||||| |||||| | |||| | || |||| ||| | ||| Sbjct 233777 AGACAGTAATTGATATGGCTGCAGATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGA 233836 Query 76839 --ATCTATTCATGGAAAGT-CCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGT 76895 ||| || ||||||| | | ||| || | ||| | || ||||||||| | || | | Sbjct 233837 ACATCCAT--ATGGAAAATGCTAACTTTG-CAAAGTTATCATCTATGCATTTTTATGGTT 233893 Query 76896 GGAAACAGGGGCTCAAAACCGGAATGTACTAT 76927 ||||| | || || ||||| || || || ||| Sbjct 233894 GGAAAAAAGGTCTAAAAACAGGCATTTATTAT 233925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568436689280