Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq15 165 2e-35 seq151 154 3e-32 seq139 154 3e-32 >seq15 Length=98471 Score = 165 bits (182), Expect = 2e-35 Identities = 477/729 (65%), Gaps = 22/729 (3%) Strand=Plus/Plus Query 49649 TAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAA 49708 ||||||||| || |||||||||| |||||| | ||| | | | |||||||| ||||| Sbjct 53305 TAATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACC-AATAA 53363 Query 49709 TTTAAATGGTAATGCA-TCATCAATAAATTCtttttctatttctacagcttgtttaatta 49767 | || | || | ||| || ||| | | |||| | ||| ||||||| | || | Sbjct 53364 GATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGA 53423 Query 49768 tcataattatattattttt--tgataatttatatttaatatgattcgcatatattaaACA 49825 | | || || | | || ||||||| |||||| || |||||||||||| Sbjct 53424 T--TTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTT---ATATATTAAACA 53478 Query 49826 TGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 49885 ||||| |||| ||| | ||| || || | | |||| ||||||| ||| || | ||| Sbjct 53479 AGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 53538 Query 49886 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 49945 ||||| | ||| | |||||||||||||| |||| ||| |||| |||||| | || Sbjct 53539 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 53598 Query 49946 ACCCTCGACACACGCA-AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATA 50004 || || ||| | || ||| | || |||||| | |||| | || | || | Sbjct 53599 TCCTTCAACAG-CACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAATTCA--- 53654 Query 50005 TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 50064 |||| || | ||||| |||||||| ||||| | || |||| || |||| || Sbjct 53655 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAA 53714 Query 50065 ATAATTCAttttt--ttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACAT 50122 | | ||||| ||| | || | ||| ||||| | Sbjct 53715 AGAG--CATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGT 53772 Query 50123 TTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATA 50182 |||| ||||| ||| |||| |||||||| | |||| | ||| ||||||| Sbjct 53773 TTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTAT 53832 Query 50183 CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 50242 || | ||| || ||| | | |||| || || ||||| |||||| ||| || Sbjct 53833 TTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGC 53892 Query 50243 GAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGA 50302 ||||||||||| |||||||| ||||||||| ||||| ||||| | | |||||||| Sbjct 53893 AAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAATC 53952 Query 50303 TTCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTT 50360 | | ||| |||| || ||| | ||||| | ||||||||||||| | | |||| Sbjct 53953 TCTAGTATC--TTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTTTT 54010 Query 50361 TTATACATT 50369 ||||||||| Sbjct 54011 TTATACATT 54019 >seq151 Length=91942 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||||||| | || ||||| |||||||| | |||||| || || |||||| Sbjct 55159 ATACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 55100 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || |||||||| || |||||||| || | |||||||||||| Sbjct 55099 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 55040 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || || || || ||||| || | |||||| | ||| Sbjct 55039 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 54980 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||| || || || || || || || |||| ||| |||||||| || Sbjct 54979 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 54927 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | ||||||||||||||||||| |||||| || || || ||| Sbjct 55387 ATACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCA 55328 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || |||||||| || |||||||| || | |||||||||||| Sbjct 55327 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 55268 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || || || ||||| || | |||||| | ||| Sbjct 55267 GGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 55208 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || || || || || || || || | ||| |||||||| Sbjct 55207 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 55158 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||||||| | || ||||| |||||||| | |||||| || || |||||| Sbjct 55615 ATTCCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 55556 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || |||||||| || |||||||| || | |||||||||||| Sbjct 55555 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 55496 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || || || || ||||| || | |||||| | ||| Sbjct 55495 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 55436 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || || || || || || || |||| || |||||||| Sbjct 55435 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 55386 >seq139 Length=542781 Score = 154 bits (170), Expect = 3e-32 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| | ||| |||||||| | ||||||||||| ||||| | ||| || |||||| || Sbjct 271513 AATTACACCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTA 271454 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||||||| |||| |||| |||||||| || ||||||||||| | | ||||||||| Sbjct 271453 GTCAGATAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATC 271394 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||| || || || || ||||| || || || |||||||| |||| ||| || | Sbjct 271393 AGGAGGAATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGG 271334 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 ||| ||||| | || ||||| || || ||||| ||||| | ||| || ||||| || || Sbjct 271333 TTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTTCTT 271274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984478032270600