Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq91 158 4e-33 seq153 114 4e-20 seq135 87.8 5e-12 seq30 84.2 6e-11 >seq91 Length=99743 Score = 158 bits (174), Expect = 4e-33 Identities = 354/521 (68%), Gaps = 17/521 (3%) Strand=Plus/Plus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 |||||||||| || || | ||| |||||||| || ||||||| ||| | | |||||| Sbjct 58471 TCCTATCAAATCTTCCTGGACGTGTTAATGCAGGATCTAATACATCAGAACGATTTGTTC 58530 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| ||||||||||||| | | ||| ||| Sbjct 58531 CTGCTAAAACTATTACTCCATTAT-TTTCAGTAAATCCATCCATTTCTACAAGAATCTGA 58589 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATT---TGAACCTCTTGAATCACCCGAATC-GCTCCt 289022 ||||| || ||| || |||||||| |||| | | ||||| | || | Sbjct 58590 TTAAGAGTGCTTTCTCTCTCATCATTAGATGAAGCAGCAAATCCACCCCCTTTTGCACGC 58649 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| || ||||| ||||||||||| ||||| |||| | || ||||| || ||| || Sbjct 58650 TTTCTT-CCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAATTTTCTTGC 58708 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || ||||||||||||||| | ||| || | |||||| | || || | ||| || Sbjct 58709 CTGTGAAAATAATTCTCTTACTCTACTTGCACCCATTCCAACAAAAATCTCAATAAAATC 58768 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | |||| | || |||| |||||| ||||| || || || || | || | | Sbjct 58769 ACTTCCAGATATATAAAAAAATGGTACATTAGCTTCACCAGCAACAGCTTTTGCTAATAA 58828 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| ||||| || || |||||||| | |||| | | || ||||||| |||||| ||| Sbjct 58829 TGTTTTACCGGTACCTGGTGGTCCTACCAATAAAGCACCTTTTGGTATTTTTGCACCA-- 58886 Query 289263 AGA-CTT---ATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| ||| || ||| | || || ||||| |||||||| | ||| | | ||| | | Sbjct 58887 AGATCTTGAAATCTTTTT---GGATCTTTTAAGAATTCTACCAATTCATATATTTCTTGT 58943 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 || || || | ||| || | |||| ||| ||||||| Sbjct 58944 TTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAATATT 58984 >seq153 Length=380987 Score = 114 bits (126), Expect = 4e-20 Identities = 776/1233 (63%), Gaps = 56/1233 (5%) Strand=Plus/Minus Query 155313 TCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCA 155372 || ||||| ||| |||| || |||||||| | |||||| | | ||||| ||||| Sbjct 233330 TCGAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCA 233271 Query 155373 GATGTAAATGCGATATC---CATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATA 155429 || ||| ||| |||| ||||| | ||| || | || |||| ||||| Sbjct 233270 GACTCGTATGGCATACGAAGCATCATGAAACA---GTCTGCGAGCCCTTGAATGCCAATC 233214 Query 155430 CCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTC--TTCTTGTTTGGGTAAAAATTC- 155486 || | ||| ||||| || |||| | | |||| ||||| | | | | || || Sbjct 233213 CCCAATGGACGATGTCTTAAATT---CGAGTTTGTACATTCTT-TAAGAGAATAATATCC 233158 Query 155487 -ACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATTT 155542 || ||||| | ||||| ||||| |||| || |||| || || ||| ||| || Sbjct 233157 AACGTCAATCAATTTATTCAAATTCCTCGTAATCA---CCTTCGTAACTTCTTTTAACTT 233101 Query 155543 CACATAGTCAAATGTTTT---ATCCTCATTTACAAACATACCAAGACCAATAGACGCCAG 155599 || | ||||| || || || | || || ||| | ||| |||||||||||||| Sbjct 233100 ATCAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAG 233041 Query 155600 ATTACATACCGCAGTCTCCTTGTCGTCGCT---GTATTCTACAATCTCACAGCACAGGTT 155656 |||||| || ||| || ||| | ||| |||||||| || || ||| | ||| Sbjct 233040 ATTACAAACGGCAACTTC---GTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTT 232984 Query 155657 AGAACTCTTGA-----TGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 | ||||| | || || ||||| ||||||||| ||| || || |||||| Sbjct 232983 A-----CTTGAAACAATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCT 232929 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGG 155771 || || ||| |||| || || ||||| || || || | | || | ||| || Sbjct 232928 TTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAAGT 232869 Query 155772 TCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATT--TCATATACAGCG 155829 | | || || || || | | ||||| |||||| | ||||||| || Sbjct 232868 TTCTGCGCTTTCATCGTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATA--GCT 232811 Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889 | |||| || || || ||| || ||| ||| | ||| ||||| | || | Sbjct 232810 TCTTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAG 232751 Query 155890 ACCAAATTTTATTACCGATTACACGCT--CCATAAATACATCACTCGCCCAAATAGCATA 155947 |||| || || || | || || |||| || | |||| |||||| ||| Sbjct 232750 TCCAATCTTGAT--CCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGG 232693 Query 155948 GAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATT 156006 || || || | | | | | ||| || | || |||||||||| | || | || | Sbjct 232692 AAAGAGATCGCGA-CATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACT 232634 Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC-- 156064 | ||| |||| || ||| |||| ||| || |||| ||| || | ||| || Sbjct 232633 CTACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTC 232574 Query 156065 -ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123 ||| ||||| | ||||| |||||| | ||| | || | ||||| ||||| | |||| Sbjct 232573 CACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCAT 232514 Query 156124 TGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTA 156183 | || | ||||| ||||| ||||||| ||||||| | | || |||| | | Sbjct 232513 TAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCA 232454 Query 156184 GTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243 |||| ||||||| ||| ||| | ||||||| ||| || | || |||| Sbjct 232453 CCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATAC 232394 Query 156244 CTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTG 156303 | | || ||||| ||| || |||| | | || || | ||||||||| || | Sbjct 232393 CGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCG 232334 Query 156304 TTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGT 156363 | || | || || ||||| |||||||||||| ||||||| || | || | | || | Sbjct 232333 TGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCAT 232274 Query 156364 ATGTCTC--CTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCA 156421 |||| || | | || |||| || | | ||||||| ||| |||| |||| Sbjct 232273 ATGTTTCAAGTGCAGCT--TCAATATCACCACAATGAATACCACAAGAAACCCGCATCAG 232216 Query 156422 CATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAG 156481 | ||| || || | || |||| |||||| ||||| || | | ||| || Sbjct 232215 AAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAG 232156 Query 156482 AGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 |||||| || | ||||||||| | |||||| Sbjct 232155 AGTTTTGAAGGCAAAATAATCATATTCAAAATC 232123 Score = 105 bits (116), Expect = 2e-17 Identities = 282/426 (66%), Gaps = 14/426 (3%) Strand=Plus/Minus Query 154535 CAGATAATAAATACCTGTCTTTAGCCCTGCCCGCCAACCATAGAAATGCATATTTGTTAA 154594 || ||||||||| ||||| ||||| ||| ||||||||| ||||||||| || ||| Sbjct 233928 CAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 233869 Query 154595 TGATTTAGGCTCTGGGTCTTCCATCCATAAATTCATACTCTGCGATTGGCAAATATATAA 154654 | | | | | |||||| | |||| | |||||||| |||| |||| Sbjct 233868 CTTTGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGG 233809 Query 154655 TCCGCGGTCACGAGCCATATCAATTAGTGTCTTCATTTTAATTTCCCATACAATCTTGTA 154714 || | || |||||||||||||| |||||| || |||||||||||| |||| || Sbjct 233808 ACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATA 233749 Query 154715 TTTCTCTTTAATATGTTCTGGTAGTCCATCAATATATTGAACGCTTCCCTTGTTGGCAAT 154774 ||| |||| || || | | | |||| ||||| || || || || ||||| Sbjct 233748 AAGCTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAAT 233689 Query 154775 AATATTGTTCTTGACGCTTTCATCCCATAGTTTTAGTGCCAGTAGTTCATCGACCAGAT- 154833 |||||| | ||| | || |||||||||| || | |||| |||| | || | Sbjct 233688 AATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTG 233629 Query 154834 ---ATTTATTAACCATCGTAAATTCACCCGCCAGAGTTTTCCT--GCTG-TAAATATTAC 154887 ||||| || || | || ||||| | || | ||| | || ||||| || Sbjct 233628 CGGATTTACTA--CAAAG--AACTCACCAGATAG---TACCCTACGATGATAAATGTTCG 233576 Query 154888 TTGTAATTGGCTCAAAGCACTCGTTATTACCTAAAATCTGGCTTGTGCTTGCTGTAGGCA 154947 || | ||||||||| | ||| || ||||||||||| || ||| |||||| |||| Sbjct 233575 AGGTGAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCA 233516 Query 154948 TGGGAG 154953 | |||| Sbjct 233515 TTGGAG 233510 >seq135 Length=258272 Score = 87.8 bits (96), Expect = 5e-12 Identities = 235/355 (66%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 302494 ATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTCA 302551 ||||| || || || || ||||| ||||| || | | || |||| || || || Sbjct 183845 ATTCCATCTTCTCCATAAAGGAAT--TGAATAATATCGCCATTACTATTCCTAACAGTTC 183902 Query 302552 TATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 ||||||| | |||| |||||||| ||| |||| | | || ||||| || | Sbjct 183903 TATCATATTGCACCATACAATCTTCCATTGCCTTTATTAGCCTTCTTTGTATATACCCTG 183962 Query 302612 TTGTAGATGTTTTTACA-GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 || || ||||| ||| || |||||||| | || | | || ||||||||||| || Sbjct 183963 TTTCTGAAGTTTT-ACACGCAGTATCAATGATTCCTTCTCTGCCTCCCATAGCATGAAAA 184021 Query 302671 AATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 || | || | ||| || || || | | ||| || ||| |||||||| || Sbjct 184022 AAAACTTCCTGGGGTGTAAGACCTGAAAGATATGAGTTCGAAACAAAACCACGACTTTCA 184081 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 ||| || || | || ||||||||||| | | || | | | | || |||| || Sbjct 184082 GGCCCATAATCATATTTCAAAAAGTGTGGCAAGCTTCTATCCCTAAATCCAAATGGAATG 184141 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA 302845 || || || ||||| || |||||||| | ||| | || ||||| |||||||||| Sbjct 184142 CGTTTACCTTCAACATTTTGCTGTCCAACGCATGCCATAATCTGTGAAATATTTA 184196 >seq30 Length=32694 Score = 84.2 bits (92), Expect = 6e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 448899 GAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATCCAGAT 448958 ||||| | |||| |||||| | | | ||| | ||| |||||||||||||| || ||| Sbjct 21672 GAAATAAGGAAGTCATATAGAAAATTAGCATTAAAATGGCATCCTGATAAAAACCCTGAT 21613 Query 448959 AATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATT 449012 |||| || ||| || ||||||| |||||| ||||| | ||||||| ||| || Sbjct 21612 AATAGAGAAGAAGCTGAGGAGATGTTCAAAAAGATTGCAGAAGCTTACGAAGTT 21559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814658204572