Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq151 113 3e-20 >seq151 Length=91942 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| |||||||||||||| ||||| | | || | | ||| || | |||||| || Sbjct 55126 GTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCT 55067 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | ||||| | ||| ||||| || || || || || || || || ||| |||| || Sbjct 55066 GCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTG-AATCTTTGCCTT 55008 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || ||| |||| ||||| | ||| ||||| || || || || || Sbjct 55007 AACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGT 54948 Query 29769 TTTAACAAATATCTGCATTTT 29789 |||||||| |||||||| || Sbjct 54947 CTTAACAAAAATCTGCATATT 54927 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| | || || |||||||||||||| || || | | || | | ||| || Sbjct 55366 ACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCT 55307 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| || ||| | ||||| | ||| ||||| || || || ||||| || ||||| Sbjct 55306 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTG- 55248 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| || ||| | || | || || ||| |||| ||||| | ||| ||||| || Sbjct 55247 AATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTT 55188 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| |||||||| Sbjct 55187 TCCTGTCAAAGTCTTGACAAAAATCTGCAT 55158 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| |||||||||||||| ||||| | | || | | ||| || | |||||| || Sbjct 55582 GTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCT 55523 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | ||||| | ||| ||||| || || || || || || || || ||| |||| || Sbjct 55522 GCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTG-AATCTTTGCCTT 55464 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || ||| |||| ||||| | ||| ||||| || || || || || Sbjct 55463 AACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGT 55404 Query 29769 TTTAACAAATATCTGCAT 29786 ||||| || |||||||| Sbjct 55403 CTTAACGAAAATCTGCAT 55386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218467601996