Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq15 116 3e-21 >seq15 Length=98471 Score = 116 bits (128), Expect = 3e-21 Identities = 377/568 (66%), Gaps = 22/568 (4%) Strand=Plus/Minus Query 43727 GACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 || || ||| |||||| |||||||| | || ||||||||| | ||||| ||||| Sbjct 54030 GATATTTGGTCAATGTATAAAAAAGCTGAAGCATCATTTTGGGTTACTGAAGAGATTGAT 53971 Query 43787 TTGACTAAAGACT-TAGCACATTGG-ATTGCATTAAAACCACAAGAAAAACATTTTATAT 43844 | | | |||| ||| | ||||| | | ||||| | | |||| ||||||||| Sbjct 53970 CTAAGTCAAGATACTAG-AGATTGGGAAAGTCTTAAAGACCCT-GAAAGACATTTTATCA 53913 Query 43845 CTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTC 43904 | || || || || |||||||| || || || || || | ||||| || | ||| Sbjct 53912 AATACGTCTTAGCATTCTTTGCTGCAAGTGATGGCATTGTTATGGAAAACTTAGC-AGTA 53854 Query 43905 GGTTTGCGCA-AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 ||| | | |||| | ||| |||||||||| || | ||||| |||||||| | Sbjct 53853 AATTTCCTTAGAGAAATACAAATACCAGAAGCCAGAATGTATTATGCTTTTCAAATGTCT 53794 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 || ||| | || ||| |||| || | || || |||| || || | ||| Sbjct 53793 ATTGAACAAATACATAGTGAAACTTATTCATTACTTATTGATAGATATATTACTGATATT 53734 Query 44024 CACGAGAAGCATCGATTG---TTTAATGCGATAG---AAACAGTACCTGCGATTAAACAT 44077 | |||| | || | || ||| | || || | | | | ||| ||||| | Sbjct 53733 AA--AGAA-CGTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTG---TTAAAAAG 53680 Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCA-AATGATTCTTTTGGAGAACGACTTGT 44136 |||||||| ||||| ||||||||| ||||| || ||| |||||| ||| || || | Sbjct 53679 AAAGCAGAATGGGCAACTAAATGGATGAATTCTGAACGAT-CTTTTGCTGAAAGAATTAT 53621 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGT 44195 | || | ||| ||||| ||| | ||||| || | | |||| | | || |||||| Sbjct 53620 TGGATTCTGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTG-CAATTTTTTGGC 53562 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATG 44255 | || ||||| || | |||||||| | || ||||| ||||| | || |||||||||| Sbjct 53561 TTAAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATG 53502 Query 44256 AAGGCTTACATTGCGATTTTGCTTGCTT 44283 |||| | ||| || |||||||| || Sbjct 53501 AAGGTCTCCATGCTGACTTTGCTTGTTT 53474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455244336780