Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq151 145 7e-30 seq139 118 9e-22 >seq151 Length=91942 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| |||| ||| | ||||| ||||| || Sbjct 54930 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 54989 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| ||||| || || ||||| || ||||| |||||| Sbjct 54990 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 55049 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || || || | || ||||||||| Sbjct 55050 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 55109 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||||| || ||||| || || ||| Sbjct 55110 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTG 55142 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| |||| ||| | ||||| ||||| || Sbjct 55158 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 55217 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| |||||||| || || || || ||||| |||||| Sbjct 55218 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 55277 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || || || | || || |||||| Sbjct 55278 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 55337 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||||| || |||||||| || ||| Sbjct 55338 ATTCAAAAAGAGTCTACTTTACATTTAGTATTG 55370 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| |||| ||| | ||||| ||||| || Sbjct 55386 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 55445 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| ||||| || || ||||| || ||||| |||||| Sbjct 55446 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 55505 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || || || | || ||||||||| Sbjct 55506 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 55565 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||||| || ||||| || || ||| Sbjct 55566 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTG 55598 >seq139 Length=542781 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| | || || ||| | || || | ||||| ||||| ||| Sbjct 271280 ATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCC 271339 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| || || || || || ||||| || || |||||| Sbjct 271340 GATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGATCAA 271399 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||||||||||| || || | || || ||||| Sbjct 271400 CAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAAT 271459 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || || |||||||| || || ||||| || ||| Sbjct 271460 ATCCAGAAGGAGTCCACTTTGCATTTAGTATTG 271492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917551909120