Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq151 131 1e-25 seq139 100 2e-16 >seq151 Length=91942 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || | || ||||| || |||||| | |||||||| | | Sbjct 55386 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 55445 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | ||| ||| || || ||||| | || || ||||| Sbjct 55446 GATACAATTGAGAATGTTAAGGC-AAAGATTCAGGATAAGGAAGGAATCCCACCTGATCA 55504 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | || || | | ||| | |||||||| Sbjct 55505 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 55564 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| |||||||||||||| ||||| ||||| || || | |||| ||| Sbjct 55565 CATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGCGGA 55613 Score = 127 bits (140), Expect = 1e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| ||||| || | || ||||| || |||||| | |||||||| | Sbjct 54927 AATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCT 54986 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| |||| | ||| ||| || || ||||| | || || || Sbjct 54987 TCAGATACAATTGAGAATGTTAAGGC-AAAGATTCAGGATAAGGAAGGAATCCCACCTGA 55045 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| ||||| || ||||| || |||||| | || || | | ||| | ||||| Sbjct 55046 TCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTA 55105 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||||| |||||||||||||| ||||| ||||| || || Sbjct 55106 CAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAG 55144 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || ||||| || |||||| | |||||||| | | Sbjct 55158 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 55217 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | ||| ||| || || || || | || || ||||| Sbjct 55218 GATACAATTGAGAATGTTAAGGC-AAAGATTCAAGATAAGGAGGGAATCCCACCTGATCA 55276 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || |||||| | || || | | ||| | || ||||| Sbjct 55277 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 55336 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||||||||| || ||||||||||| || ||| | |||| || Sbjct 55337 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGG 55384 >seq139 Length=542781 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||| || ||||| | || ||||| || ||||| | |||||||| | Sbjct 271277 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 271336 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| |||| | |||| ||| || || || || || | || || ||| Sbjct 271337 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGAT 271396 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||||||| | || ||||| || || ||| ||||||| | | ||| || || ||| Sbjct 271397 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 271456 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || || || |||||||| || |||||||| || || Sbjct 271457 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAG 271494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008957359248