Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001593475.1_202016-03- 17] 156 sequences; 9,156,091 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq153 275 9e-69 seq15 223 5e-53 >seq153 Length=380987 Score = 275 bits (304), Expect = 9e-69 Identities = 1169/1824 (64%), Gaps = 46/1824 (3%) Strand=Plus/Minus Query 75415 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTT 75474 ||| || || || ||||||||||| |||| || || |||||||| || || || Sbjct 233925 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 233866 Query 75475 GGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 75534 | | | | | || | ||||| || |||| || || |||| | | | || Sbjct 233865 TGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACC 233806 Query 75535 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAAC 75594 ||||| || ||||| | || | |||||||| |||||||| | ||| || ||| Sbjct 233805 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAG 233746 Query 75595 TTGTTTGATATCATCTGGAAGATT---TGTATTTTGAATGGATCCGCCATCAGATATAAT 75651 | ||||| || |||| | | |||||||||| | ||||| | | ||| Sbjct 233745 CTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATA---CTGCCATTATTTGCAAT 233689 Query 75652 TGTATTCT---TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 75708 |||||| | | | ||||| ||| || ||| |||| | | || | || Sbjct 233688 AATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTG 233629 Query 75709 AGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATA 75768 ||||| || | || || ||||| | ||| || ||| ||||| || ||| | Sbjct 233628 CGGATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAA 233569 Query 75769 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828 ||| || | | |||||||| || |||||||| | ||| || || || ||||| || | Sbjct 233568 TGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGA 233509 Query 75829 CACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATC 75888 | ||||| | ||| | | ||||| | | || ||||||| || | | |||||| Sbjct 233508 TATCAATAGAGAATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATC 233449 Query 75889 CCAAAGATCTGA---TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGC 75945 ||||| | || |||| ||| |||| | ||| |||||| ||| || || || || Sbjct 233448 ACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGC 233389 Query 75946 ATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTC 76005 | || || |||||||||||| | || | ||||| || || || || || || || Sbjct 233388 AGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATC 233329 Query 76006 TAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT-GCGCTTCAAGA 76063 | || | ||||| || ||| || || | ||||| || |||| || | ||| Sbjct 233328 GAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGA 233269 Query 76064 CTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCA 76123 || | | || | | | | || || ||||| || || |||| ||||| || Sbjct 233268 CT--CGTATGGCATACGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCC 233211 Query 76124 ATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCT 76183 | || | |||||| ||| || || | |||| || || ||||| || || Sbjct 233210 AATGGACGATGTCTTAAATTCGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCA 233151 Query 76184 ATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA 76243 || | |||||| | ||| || || || || || || |||| || ||||||| Sbjct 233150 ATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCA 233091 Query 76244 AA-----TTTTCCATCTATCA-CAAACATATTAAGAGCTATAGATGCTAGATTACAAACG 76297 || | || | ||||| | ||| | ||| | ||||| || |||||||||||| Sbjct 233090 AACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACG 233031 Query 76298 GCTACCTCAT--TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGA 76355 || || || | | || | | |||| ||| || || ||||||| ||||| | | Sbjct 233030 GCAACTTCGTCCTTGC--TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAA 232973 Query 76356 TAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG-AG--TCCTTATAAAGAACAA 76412 ||||||| | ||||| ||||| || |||| || || || || |||||| || || Sbjct 232972 TAGTTCCCAAATTTTTCTGGTTACT---TTTGCTATTTGCAGCATCTTTATAACAAATAA 232916 Query 76413 ACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA 76472 | || || || || ||||| || | | | || | ||| | | ||| || || Sbjct 232915 ATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCTT- 232859 Query 76473 TTATAGATTTGTATC----GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCA 76528 | || | ||| || || | | | | ||||| | | ||||| | | ||| ||| Sbjct 232858 TCATCGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCA 232800 Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588 || ||||||||||| | ||| || ||||||| || ||||| | | ||| || | Sbjct 232799 TCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGA 232740 Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 76648 || | || ||| | || ||| || |||||||| | ||| || ||| ||| ||||| || Sbjct 232739 TCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGA 232680 Query 76649 GTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708 ||| ||||| ||||| |||||| ||| || | ||||| | || |||| Sbjct 232679 CATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACG 232620 Query 76709 TGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATA 76768 ||||||||||| | ||| || || || |||| || || || || ||||| ||| Sbjct 232619 TGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATA 232560 Query 76769 TATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTT 76828 || || ||||||| ||||||||| | || ||| ||||| | || |||||| | |||||| Sbjct 232559 TACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTT 232500 Query 76829 GTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCT 76888 ||||| |||||| ||| | | | ||||||||| | | | || | || ||| Sbjct 232499 GTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCT 232440 Query 76889 GCCATTTTA--GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTAT 76946 || | ||| | || | ||| ||| | ||||||| |||| || | ||| || Sbjct 232439 GCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGAAT 232382 Query 76947 CATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 77006 | || || | || | |||||| ||||||||| | | || |||| ||||| Sbjct 232381 CTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAA 232322 Query 77007 ACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAA 77066 | | ||| || | ||||||||| || |||||| || | | | |||||||||| Sbjct 232321 AGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTG 232262 Query 77067 CTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTC 77126 | ||||| ||||| | |||||| || || || ||||||| | ||| || |||| Sbjct 232261 CAGCTTCAATATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTC 232202 Query 77127 GTTCTACAGTCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCA 77185 ||| ||| || || | ||||| || ||| || ||| |||| | |||||| || || Sbjct 232201 TTTCCACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCA 232143 Query 77186 AAATAGTTGTATGAAAAGTCTCTT 77209 ||||| | ||| ||| ||| || Sbjct 232142 AAATAATCATATTCAAAATCTTTT 232119 >seq15 Length=98471 Score = 223 bits (246), Expect = 5e-53 Identities = 588/883 (67%), Gaps = 25/883 (3%) Strand=Plus/Plus Query 46315 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAA 46371 || ||||| |||| |||||||| |||| |||||||| || | || ||||| || Sbjct 53159 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 53218 Query 46372 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAA 46431 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| ||| || || Sbjct 53219 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 53278 Query 46432 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTT 46490 |||||| || |||| || | ||| | |||||| ||||| ||||| ||||| Sbjct 53279 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 53337 Query 46491 CATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTG 46550 ||| | | | ||||| || || || | || || |||| || |||||| | | Sbjct 53338 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 53397 Query 46551 TTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCA- 46609 ||||| ||||| || ||||| || | |||| | | |||| | | Sbjct 53398 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCTAGGAGC---TGGTAATTTAAA 53454 Query 46610 -TCAAATG-TTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667 | || | |||| | |||||||| ||||| ||| ||| || |||||||| | |||||| Sbjct 53455 TTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAAT 53514 Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 | ||| |||||||||||||| |||||||| |||||||| ||||| |||||||| || | Sbjct 53515 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG- 53573 Query 46728 CGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | | |||| | |||||||| | || ||||| ||||| |||| | | || ||| || Sbjct 53574 CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 53633 Query 46787 CGTAACTGGCATCATTATGAATCCA-CCTTTGA---GCCCAATCAGCCTTTTTCTTTACA 46842 | || ||| || |||| || || || | ||||| || || || || || ||| Sbjct 53634 CAAAA----GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACA 53689 Query 46843 CAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATAT 46902 || || || | |||||| | | ||| | | |||| ||| |||| Sbjct 53690 GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATATAT 53749 Query 46903 GTATCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATC 46960 |||| || | || || ||| |||| ||| || | |||||||| ||| ||||| Sbjct 53750 CTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAG 53807 Query 46961 CGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCT 47020 | ||| | ||| ||||| | || |||| ||| || || | | | || || | Sbjct 53808 CATAATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTT 53867 Query 47021 CATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTT 47080 | | || || |||||||| |||||||| ||||| || || | ||| ||||||| | ||| Sbjct 53868 CCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTT 53927 Query 47081 CATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 47140 || | | || | | ||| || | |||||| || ||| | ||||||| Sbjct 53928 CAGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAA 53987 Query 47141 TCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATC 47183 ||| ||||| || || |||||||||||||| ||| ||||| Sbjct 53988 CCCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 54030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933009777920