Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 288 1e-72 >seq4 Length=1181719 Score = 288 bits (318), Expect = 1e-72 Identities = 1189/1857 (64%), Gaps = 40/1857 (2%) Strand=Plus/Minus Query 52807 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 52865 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 333521 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 333463 Query 52866 GACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTA 52925 |||| |||| || |||||||||||| || || || | | | | | || | | | Sbjct 333462 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 333403 Query 52926 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 52985 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 333402 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 333343 Query 52986 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 53044 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 333342 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 333284 Query 53045 A-GGT--TTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 53101 | || | |||| |||||| ||| || | | ||||| | | ||| | | |||| Sbjct 333283 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 333224 Query 53102 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 53161 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 333223 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 333164 Query 53162 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 53221 ||||| | ||| || ||| ||||| || ||| | || || | | |||||| || Sbjct 333163 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 333104 Query 53222 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 53281 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 333103 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 333044 Query 53282 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTACA 53338 || ||| | || ||||||| || | ||||||| ||||| | || ||| | Sbjct 333043 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 332984 Query 53339 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 53398 || ||||| |||||| ||||| || ||| || |||||| ||| Sbjct 332983 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 332924 Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 ||||| || | || || || || ||||| || || || | || | ||||| || | Sbjct 332923 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 332864 Query 53459 TCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTAAG 53515 || ||||| | ||||||| | | ||| | ||| | || |||| ||| ||| Sbjct 332863 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTATGGCATA--CGAAG 332808 Query 53516 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 53574 | || || |||||| | ||||||| ||||| || | || | |||||| ||| Sbjct 332807 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 332748 Query 53575 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCT 53634 ||| ||| | |||| || || |||||| || || || | |||||| | || || Sbjct 332747 CGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 332688 Query 53635 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTA 53690 ||| || || || || || | || ||||||||| |||| || | | Sbjct 332687 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGT-TATTTTTAT 332629 Query 53691 CAA--ACATGTTCAATG-CAATAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATC 53745 ||| | | | || | ||||||| ||||||||||||||||| || || | | || Sbjct 332628 CAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC--T 332571 Query 53746 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 53805 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| || Sbjct 332570 AGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTG 332511 Query 53806 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTG 53865 ||||| || | || ||||| |||||| ||| ||||| || || || ||||| || Sbjct 332510 GTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTG 332451 Query 53866 GGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTC 53925 | | || || ||| | | || || || | || | | | Sbjct 332450 AGCCTGTAAGATTAAGAACCAAAGTTTCTGCGCTTTCATCGT--TTTCCTTCCACGGCCT 332393 Query 53926 TCTTTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 | |||| ||| | | ||| | | ||| || || |||||||||| | |||||| Sbjct 332392 TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCC 332333 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATA 54040 |||||||| || ||||| | | ||| ||| | ||||||| |||| || ||| Sbjct 332332 CTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCATG 332276 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || |||||||||| |||||| || ||| ||||| | ||| || || ||||| Sbjct 332275 AACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCA 332216 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 |||||| ||| || | ||| | | || |||| ||||| |||||||| || || Sbjct 332215 TGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAATT 332156 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | || | || || || ||| || ||||| || || ||||| |||| ||||||| Sbjct 332155 GCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAA 332096 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | || ||| ||||| | ||||| ||| ||||| || || ||||| ||| Sbjct 332095 ACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCA 332036 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 | | | ||||||||| | || | || | || ||||| | ||| || |||| Sbjct 332035 GTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCG 331976 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 ||| ||| || ||| |||| || | ||| ||| || || | |||| |||| Sbjct 331975 CATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAA 331916 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 || |||||||| | || || || | |||||| | || || | || || ||| Sbjct 331915 CAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTA 331856 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGA 54520 || |||||| || | | | || || || | || | || ||||| | |||| Sbjct 331855 AAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGA 331796 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 || || | || ||||| | | || || |||||||| || | ||||||| ||| Sbjct 331795 ATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATT 331736 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 54637 || || | |||||| |||| | |||||| || ||||||| | ||| ||| ||| Sbjct 331735 TTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATCT 331679 Score = 233 bits (258), Expect = 2e-56 Identities = 588/877 (67%), Gaps = 35/877 (4%) Strand=Plus/Plus Query 23819 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 23875 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 54425 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 54484 Query 23876 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATA 23935 ||||||||||||| | ||| ||| ||||| |||| | ||||| | ||| || || Sbjct 54485 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 54544 Query 23936 GATTCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTT 23995 |||| || || |||| || ||| |||||||| || ||||| || |||||| Sbjct 54545 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 54604 Query 23996 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 24055 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 54605 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 54664 Query 24056 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA----T 24111 ||||| || || |||| ||| || | |||| | | | ||| | Sbjct 54665 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCT------AGGAGCTGGTAATTT 54718 Query 24112 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 24168 | | | || | |||| | || ||||| || || || ||| || ||||| || || | || Sbjct 54719 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 54777 Query 24169 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 24228 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 54778 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 54837 Query 24229 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTT 24287 | | | |||| | | |||||||| | ||||||||| || || || |||||| |||| Sbjct 54838 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 54896 Query 24288 TCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 24344 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 54897 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 54953 Query 24345 ACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 24404 ||| || || || | |||||| | ||| ||| |||| ||| | Sbjct 54954 ACAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATA 55013 Query 24405 TATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAA 24462 ||| ||||||| | || || ||| |||| ||| || | |||||| | |||||||| Sbjct 55014 TATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAA 55071 Query 24463 ATCCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAA 24521 | | || | ||| ||| || || | || |||| |||| || || | ||||||| Sbjct 55072 AAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAG 55130 Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 24581 ||||| | || || || ||||| || ||||| || || || || | ||| ||||||| | Sbjct 55131 TTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGT 55190 Query 24582 TTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 24639 |||| ||| || || | | |||||| | |||||| | || ||| | |||| Sbjct 55191 CTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTT 55248 Query 24640 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676 | |||||||||||| || || ||||||||||| Sbjct 55249 CAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 55285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721503520240