Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4 250 2e-61 >seq4 Length=1181719 Score = 250 bits (276), Expect = 2e-61 Identities = 595/877 (68%), Gaps = 43/877 (5%) Strand=Plus/Plus Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 |||||||||||| |||||| ||||| ||||||||||||||||||| ||||| ||| | Sbjct 54454 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 54513 Query 13974 CCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 14033 |||| ||||||| ||||| | | | | ||| | | | | | || |||| Sbjct 54514 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 54573 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA-TTCATACCTATTAGT 14092 ||||||| |||| || ||||||||||| | ||| || || | |||||||| || || Sbjct 54574 ATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATAAGA 54632 Query 14093 TTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | ||||||| | | | || ||| | | |||| | ||||| || ||| || Sbjct 54633 TCAACAGGAAG-AGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 54691 Query 14152 AATCGTAATAATTTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACA 14205 | || || | | || || || | |||| || |||| | |||||||| Sbjct 54692 --TTGTTGTACTCT----AGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACA 54745 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 ||||| ||| ||| || || ||||| | |||||||||||| || |||||||| | ||| Sbjct 54746 AGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 54805 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATA 14324 ||||| | ||| |||||||| | |||||| |||||| | || | | || ||||| | | Sbjct 54806 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAA 54864 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14384 |||| ||||| ||| || | || | || ||| |||| ||| || ||| | Sbjct 54865 TTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAATTC---A 54921 Query 14385 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14444 ||||||| | |||||||| | ||| ||||||| | || || ||| || | || Sbjct 54922 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAA 54981 Query 14445 ATA-AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 | | || | | | |||||| || | ||| ||| ||||||||||||| ||| || Sbjct 54982 AGAGCATTTGACGT-TCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTT 55040 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 ||| ||||| | ||| |||| || |||||| ||||| | ||| ||||||| | Sbjct 55041 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATT 55100 Query 14564 TGTA--CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 |||| |||| || ||| || | || || ||||| |||| || |||||||| || | Sbjct 55101 TGTATTTCTCTAAGGAAA--TTTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAG 55158 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA---TTGCTGAGTTTTTTCC 14678 |||| ||||| || | || ||| ||||| || || |||| | | || ||| || Sbjct 55159 CAAAGAATGCTAAGACGTATTTGATAAA--ATGTCT-TTCAGGGTCTTTAAGACTTTCCC 55215 Query 14679 AATCGGCTA-AATC----CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAAC 14733 |||| ||| ||| |||||| |||| ||||| ||| |||||| || | Sbjct 55216 AATC-TCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATGCTTC 55270 Query 14734 AGCTTTTTTATACATTACCCATATTTCTTTATATAAT 14770 |||||||||||||||| ||| || |||||| |||| Sbjct 55271 AGCTTTTTTATACATTGACCAAATATCTTTAATTAAT 55307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345521618840