Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 291 1e-73 >seq4 Length=1181719 Score = 291 bits (322), Expect = 1e-73 Identities = 1196/1860 (64%), Gaps = 46/1860 (2%) Strand=Plus/Minus Query 62045 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 62103 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 333521 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 333463 Query 62104 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62163 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 333462 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 333403 Query 62164 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62223 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 333402 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 333343 Query 62224 TGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62282 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 333342 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 333284 Query 62283 A-GGT--TTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 62339 | || | |||| ||||| ||| || | | ||||| | | ||| | | |||| Sbjct 333283 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 333224 Query 62340 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCT 62399 | |||||| ||| |||| | | || | ||||| || ||||| ||| || Sbjct 333223 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 333164 Query 62400 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT 62459 ||||| | ||| || ||| ||||| || ||| | || || | |||||| || Sbjct 333163 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 333104 Query 62460 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62519 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 333103 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 333044 Query 62520 CCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA---CGGTACA 62576 || ||| | || ||||||| || ||||||| ||||| | || ||| | Sbjct 333043 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 332984 Query 62577 ACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCA 62636 || | |||||| |||||| ||||| || ||| || |||||| || Sbjct 332983 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 332924 Query 62637 TATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62696 ||||| || | || || || || | ||| || || || | || | ||||| || | Sbjct 332923 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 332864 Query 62697 TCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGG-ATAATTTAAG-A 62754 |||||||| | ||||||| | | ||| || || |||| ||| ||| | Sbjct 332863 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTATGGCATA--CGAAGCA 332806 Query 62755 GAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62814 || || ||| || | ||||||| ||||| || | || | |||||| ||| | Sbjct 332805 TCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTCG 332746 Query 62815 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62874 || ||| | |||| || || |||||| || || || | |||||| | ||| || Sbjct 332745 AGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCTCG 332686 Query 62875 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------- 62927 ||| || || || || || | || ||||||||| || | |||| Sbjct 332685 TAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTATCA 332627 Query 62928 ACAAACATGTTCAATG-CAACAGATGCCAGATTACACACGGCTACCTCAT--TAGCATCC 62984 || ||| | | || | ||| ||| ||||||||||| ||||| || || | | || Sbjct 332626 ACGAAC-TTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC--TA 332570 Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 | |||| ||| || || ||||| | ||||| | |||||||| ||||||| || Sbjct 332569 GTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGG 332510 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 ||||| || | || ||||| |||||| ||| ||||| || || || ||||| ||| Sbjct 332509 TTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGA 332450 Query 63105 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC- 63163 | | || || ||| | | || ||| | || | ||| || | | Sbjct 332449 GCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTT--TCATCGTTTTCCTTCCACGGCCT 332393 Query 63164 TCTTTCGTATAGAGTATACA-ATCG-TTC--GAACTCGTCTCCCCAAACATTGTCCAATC 63219 | |||| || | | | || || | ||| || || || |||||||||| | ||||| Sbjct 332392 TGTTTCTCAT--ACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATC 332335 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCA 63276 |||||||| || ||||| | | ||| ||| | ||||||| |||| || || Sbjct 332334 CCCTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCA 332278 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 | || |||||||||| |||||| || ||| ||||| | ||| || || |||| Sbjct 332277 TGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTC 332218 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | |||||| ||| || | ||| | | || |||| ||||| |||||||| || | Sbjct 332217 CATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAA 332158 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 | || || | || || || ||| || ||||| || || ||||| |||| ||||| Sbjct 332157 TTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTAT 332098 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 |||| | || ||| ||||| | || || ||| | ||||| || || ||||| | Sbjct 332097 AAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAAC 332038 Query 63517 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 || | | | ||||||||| | || | || | || ||||| | ||| || || Sbjct 332037 CAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTG 331978 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 ||||| ||| |||||| |||| || | ||| ||| || || | |||| || Sbjct 331977 CGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAA 331918 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 |||| |||||||| | || | || || | |||||| | || || | || || | Sbjct 331917 AACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAG 331858 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 |||| |||||| || | | | || || |||| || | || ||||| | || Sbjct 331857 TAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAAT 331798 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 |||| || | || ||||| | | || || |||||||| |||| |||||||| | Sbjct 331797 GAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAA 331738 Query 63817 TTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 |||| || ||| |||||| |||| | |||||| || ||||||| | ||| ||| ||| Sbjct 331737 TTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATCT 331679 Score = 212 bits (234), Expect = 8e-50 Identities = 588/881 (67%), Gaps = 43/881 (5%) Strand=Plus/Plus Query 33266 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 33322 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 54425 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 54484 Query 33323 ATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA 33382 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| ||||| Sbjct 54485 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 54544 Query 33383 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTT 33442 |||||| || |||| || ||| |||||||| || || ||||| |||||| Sbjct 54545 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 54604 Query 33443 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 33502 ||| | | | ||||| || || || | ||| ||||||| || |||||| | | Sbjct 54605 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 54664 Query 33503 TTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGG--ATGT 33560 ||||| || || | || ||| || | || ||| | | ||| || | Sbjct 54665 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTAC----TCT--AGGAGCTGGTAATTT 54718 Query 33561 AA---TAAATG-TTTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTAC 33615 || ||| | |||| | || ||||| || || || ||| || ||||| || || | || Sbjct 54719 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 54777 Query 33616 TAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 33675 |||| | ||| |||||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 54778 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 54837 Query 33676 TGGAAGCGAATGAT-CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTC 33734 | | | | || | | || ||||| | |||||||| || ||| || |||||| ||| Sbjct 54838 TTGCA-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 54896 Query 33735 TCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 33791 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 54897 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 54953 Query 33792 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 33847 ||| || || | || || | |||||| | ||| ||| |||| | Sbjct 54954 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGT 55009 Query 33848 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33905 || ||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 55010 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 55067 Query 33906 TGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGC 33964 ||||| | || | ||| ||| || || | || || | |||| || || | |||| Sbjct 55068 TGAAAAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGC 55126 Query 33965 TAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 ||| ||||| | || || |||||||| || ||||| || || || || | ||| ||||| Sbjct 55127 TAAGTTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAA 55186 Query 34025 ATATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACT 34082 || | |||| ||| || || | | |||||| | |||||| | || ||| | Sbjct 55187 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATC 55244 Query 34083 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 ||||| |||||||||||| || || ||||||||||| Sbjct 55245 TCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 55285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817497654640