Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 365 4e-96 >seq4 Length=1181719 Score = 365 bits (404), Expect = 4e-96 Identities = 1222/1871 (65%), Gaps = 58/1871 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| |||| ||| || || || || || |||| |||||| || || ||| Sbjct 333526 TCTACTGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTT 333467 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || | |||| || |||||||||||| | | ||||| | ||| ||| Sbjct 333466 TTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTT 333407 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 || |||| || ||| ||||| |||| | | | | ||| || || || ||||| Sbjct 333406 TCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATA 333347 Query 36970 TCTAAAATACATTTTTGAGAT--ATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 || || ||| | || | | || ||||| || || ||||| | | ||||| | Sbjct 333346 TC--AATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGTATATCCT 333289 Query 37028 CTGGTAAATCTAA----ATGTTGAATAGAACCATTATGTAACACAATTGTATTCT--TTA 37081 | || || | ||| || ||||||| ||||||| | |||| |||||| ||| Sbjct 333288 CCGG-AATTGTAAGTATATTTTGAATACTGCCATTATTTG---CAATAATATTCTGCTTA 333233 Query 37082 TGTCATTATTCCACATATTTCTA-CT-TATTAGTTCTCTCAATAGGTGTGGATTTACAAC 37139 | | | ||| |||| | | || || || || | | | ||| |||||||| || Sbjct 333232 AGCCTATCATCC-CATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTAC 333174 Query 37140 CTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGA 37199 || || ||||||| ||| || | ||| || || || |||| |||| Sbjct 333173 AAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACT 333114 Query 37200 CTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCT 37259 |||||| |||| ||| ||||| || || ||||| || |||||||| | ||| | || Sbjct 333113 CTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGA 333054 Query 37260 ATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGT 37319 ||| | | |||| | | ||| || | ||| || || |||||| || || || Sbjct 333053 ATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACA-AAGTCCAG 332995 Query 37320 TGGGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGT 37375 | | | |||| ||||||||| |||||| |||||| |||||||| || ||| || Sbjct 332994 AGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGG 332935 Query 37376 TATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCAT 37435 |||||| || || || || || ||| || || || || |||| || || || |||| Sbjct 332934 AATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCAT 332875 Query 37436 AATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG-CA 37494 |||| || ||| || |||||| ||||||| | || ||| | || ||| ||| || Sbjct 332874 AATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTATGGCA 332815 Query 37495 TAGCCCAATAAT-ATAAACACA-TCAGCCAAACCCTGAACACCGATACCTATGGGTCTAT 37552 || | || || || || ||| || || | || |||| || || || | || | || Sbjct 332814 TA--CGAAGCATCATGAA-ACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGAT 332758 Query 37553 GTTTCTTATTAGA-TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTA 37611 || | ||| || | | || ||||| | | | |||||| | || || | |||| Sbjct 332757 GTCTTAAATTCGAGTTTTTAC-ATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTA 332699 Query 37612 TTTAGATTTTTAACTAGTATT----TTCGTAATTATTCTCAACTTGTCGAACATAAATAC 37667 || | ||| || ||| | ||||||| | | | ||||| || || || || || Sbjct 332698 TTCAAATTC----CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAA-ATCAA-AC 332645 Query 37668 GT--------TATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 || | |||| ||| || || | |||||| | |||||||| || ||| Sbjct 332644 GTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCA 332585 Query 37720 ACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 ||||| || | | || | ||| ||| || ||||| || | ||||| || ||| ||| Sbjct 332584 ACTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTT 332525 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 |||||||| | || || ||| |||| || ||||||||| ||| | || || Sbjct 332524 CCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTC 332465 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGATCGC 37898 || || |||||||||| | || | ||| || |||| ||||| | ||| Sbjct 332464 CCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCA---TCGT 332409 Query 37899 TTTAAttttttt-CTTTGTTTCGTATTCTAT--ATATAATTTGTTAAAATCATTCCCCCA 37955 ||| || | ||||||| || || | ||||| || |||||||||| ||||| Sbjct 332408 TTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCA 332349 Query 37956 TACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTC 38015 ||||| ||||| ||||| ||| |||||||||| ||| |||| ||| || || Sbjct 332348 AACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTC 332289 Query 38016 TACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATA 38075 || | |||||| || | |||||| ||||| | |||| ||| | ||| ||| Sbjct 332288 AACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCAT 332229 Query 38076 TTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGG 38135 ||||| || || |||||| || | | ||| || | | |||| |||||||||| Sbjct 332228 CTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGG 332169 Query 38136 TTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAAC 38195 ||| | |||||| | || || ||| | || | || || |||| |||||| ||| | Sbjct 332168 TTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGC 332109 Query 38196 TGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGA 38255 |||| |||||| | | | ||| || | || ||||||||| | || ||| | || Sbjct 332108 AGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCG 332049 Query 38256 TATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTT 38315 ||||| | ||| | ||| |||||||||| | || || | ||||||||| || | Sbjct 332048 AATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCA-GTCT 331990 Query 38316 TGATATTAAA-GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTA 38374 | || | ||||||| ||| || ||||| ||||| | ||| || || | Sbjct 331989 TACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAA 331930 Query 38375 TTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAG 38434 | |||| ||||||| ||||||||||| || || || | ||||| | ||| | Sbjct 331929 TCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGG 331870 Query 38435 GAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTA 38494 | | |||||| | || |||||| ||| || | | ||||||||| | | || | || | Sbjct 331869 GTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAA 331810 Query 38495 TATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTA 38554 ||||||| | |||||||| ||| |||| ||| || | ||||||||||||||| | | Sbjct 331809 TATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAA 331750 Query 38555 TTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTAT 38614 ||| || | |||||| ||||| ||| |||||| ||||| | |||||||| || Sbjct 331749 CTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCAT 331690 Query 38615 ATGAATAATCT 38625 || | ||||| Sbjct 331689 ATTCAAAATCT 331679 Score = 219 bits (242), Expect = 4e-52 Identities = 592/878 (67%), Gaps = 46/878 (5%) Strand=Plus/Plus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||||||||||| ||||| |||||| || ||||| ||||||| ||||| ||| | Sbjct 54454 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 54513 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | |||||||||| | || ||| ||| |||| | | | || | | || Sbjct 54514 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 54573 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 ||||||| || || ||||| ||||| || | ||| | | | |||||||| ||||||| Sbjct 54574 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGAT 54633 Query 11520 CCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || |||| || | | |||| || | |||| | | ||| || || |||| || Sbjct 54634 CAACAGGAAGAG--AGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGAT-AT 54688 Query 11578 CGAC--GTTATAACTTCCTTAGATGGTGGATGTAA---TAAATG-TTTAAACATTAAACA 11631 || ||| || || || |||| || ||| ||| | |||| | |||||||| Sbjct 54689 -GATTTGTTGTA-CTCTAGGAGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACA 54745 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 ||||| ||| ||| | |||||| || | ||| || ||||||||||||||||| | ||| Sbjct 54746 AGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 54805 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 ||||| | ||| |||||||| | |||||| || ||| ||| ||||||||| | || Sbjct 54806 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 54865 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT-ATCC 11810 ||| || ||||| ||| | | | |||||| || | | | ||| | | |||| Sbjct 54866 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCA-AAAGATCGTTCAGAATTCATCC 54924 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 |||| | ||||| || ||||||||||| || ||| || || || | ||| | Sbjct 54925 ATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAAAGA 54984 Query 11871 AATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 |||||| |||| || |||| | | |||| |||| || | ||| ||| ||| Sbjct 54985 ---GCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTTT 55041 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA-TCGTGCCTCTGAACAC 11986 | ||| || | ||| |||| |||||||| |||| | ||| || || |||| Sbjct 55042 CACTATGTATTTGTTCAATAGACATTTGAAAAGCATA-ATACATTCTGGCTTCTGGTATT 55100 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 |||| || | | |||| || | ||||| || || | ||||| |||||||| | || Sbjct 55101 TGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGC 55159 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCA 12102 ||| ||||||| | | ||| ||||| | | |||| ||||||| | | ||||| Sbjct 55160 AAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTA---AGACTTTCCCA 55216 Query 12103 ATCATCTA-AATCT----TTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157 ||| |||| |||| || ||| ||||| |||| ||| |||||| ||| | Sbjct 55217 ATC-TCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATGCTTCA 55271 Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195 | || |||||||||| ||| ||||| | || ||||| Sbjct 55272 GCTTTTTTATACATTGACCAAATATCTT--TAATTAAT 55307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524723864720