Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 298 7e-76 >seq4 Length=1181719 Score = 298 bits (330), Expect = 7e-76 Identities = 1196/1860 (64%), Gaps = 46/1860 (2%) Strand=Plus/Minus Query 64838 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 64896 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 333521 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 333463 Query 64897 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 64956 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 333462 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 333403 Query 64957 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 65016 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 333402 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 333343 Query 65017 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 65075 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 333342 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 333284 Query 65076 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 65132 | || | |||| ||||| ||| || ||| ||||| | | ||| | | |||| Sbjct 333283 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 333224 Query 65133 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 65192 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 333223 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 333164 Query 65193 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 65252 ||||| | ||| || ||| ||||| || ||| | || || | | |||||| || Sbjct 333163 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 333104 Query 65253 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 65312 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 333103 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 333044 Query 65313 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTACA 65369 || ||| | || ||||||| || | ||||||| ||||| | || ||| | Sbjct 333043 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 332984 Query 65370 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 65429 || ||||| |||||| ||||| || ||| || |||||| ||| Sbjct 332983 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 332924 Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 65489 ||||| || | || || || || ||||| || || || | || | ||||| || | Sbjct 332923 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 332864 Query 65490 TCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTAAG 65546 || ||||| | ||||||| | | ||| | ||| | || |||| ||| ||| Sbjct 332863 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTATGGCATA--CGAAG 332808 Query 65547 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 65605 | || || |||||| | ||||||| ||||| || | || | |||||| ||| Sbjct 332807 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 332748 Query 65606 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 65665 ||| ||| | |||| || || |||||| || || || | |||||| | ||| || Sbjct 332747 CGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 332688 Query 65666 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATT----- 65720 ||| || || || || || | || ||||||||| || | |||| Sbjct 332687 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGT-TATTTTTAT 332629 Query 65721 --ACAAACATGTTCAATG-CAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 65775 || ||| | | || | ||| ||| ||||||||||||||||| || || | | || Sbjct 332628 CAACGAAC-TTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC-- 332572 Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| | Sbjct 332571 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 332512 Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895 | ||||| || | || ||||| |||||| ||| ||||| || || || ||||| | Sbjct 332511 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 332452 Query 65896 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTT 65954 ||| | || || ||| | | || | || || || | || | | | Sbjct 332451 GAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATCGT--TTTCCTTCCACGGC 332395 Query 65955 TCTCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 66012 | |||| ||| | | ||| | | || || || |||||||||| | ||||| Sbjct 332394 CTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATC 332335 Query 66013 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCA 66069 | |||||||| || ||||| | | ||| ||| | ||||||| |||| || || Sbjct 332334 CCCTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCA 332278 Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129 | || |||||||||| |||||| || ||| | ||| | ||| || || |||| Sbjct 332277 TGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTC 332218 Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 | |||||| ||| || | ||| | | || |||| ||||| |||||||| || | Sbjct 332217 CATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAA 332158 Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 | || || | || || || ||| || ||||| || || ||||| |||| ||||| Sbjct 332157 TTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTAT 332098 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309 |||| | || ||| ||||| | ||||| ||| | ||||| || || ||||| | Sbjct 332097 AAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAAC 332038 Query 66310 CACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 || || | | ||||||||| | || | || | || ||||| | ||| || || Sbjct 332037 CAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTG 331978 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 ||||| ||| || ||| |||| || | ||| ||| || || | |||| || Sbjct 331977 CGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAA 331918 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 |||| |||||||| | || || || | |||||| | || || | || || | Sbjct 331917 AACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAG 331858 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 66549 |||| |||||| || | | | || || |||| || | || ||||| | || Sbjct 331857 TAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAAT 331798 Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609 |||| || | || ||||| | | || || |||||||| || | ||||||| | Sbjct 331797 GAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAA 331738 Query 66610 TTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 66668 |||| || ||| |||||| |||| | |||||| || ||||||| | ||| ||| ||| Sbjct 331737 TTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATCT 331679 Score = 233 bits (258), Expect = 3e-56 Identities = 589/877 (67%), Gaps = 35/877 (4%) Strand=Plus/Plus Query 35842 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 35898 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 54425 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 54484 Query 35899 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATA 35958 ||||||||||||| | ||| ||| ||||| |||| || ||||| ||| || || Sbjct 54485 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 54544 Query 35959 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTT 36018 |||||| || |||| || ||| |||||||| || |||||||| |||||| Sbjct 54545 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 54604 Query 36019 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 36078 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 54605 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 54664 Query 36079 TTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGG----AT 36134 ||||| || || |||| ||| || || || | || | | ||| | Sbjct 54665 TTCAACTTCAACAGCTTCTGATATGAT-----TTGTTG-TACTCTAGGAGCTGGTAATTT 54718 Query 36135 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 36191 | | | || | |||| | || ||||| || || || ||| || ||||| || || | || Sbjct 54719 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 54777 Query 36192 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 36251 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 54778 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 54837 Query 36252 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 36310 | | | |||| | | |||||||| | ||||||||| || || || |||||| ||| Sbjct 54838 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 54896 Query 36311 TCTCCATAACCGGCACTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 36367 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 54897 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 54953 Query 36368 ACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 36427 ||| || || || | |||||| | ||| ||| |||| ||| | Sbjct 54954 ACAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATA 55013 Query 36428 TATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAA 36485 ||| ||||||| | || || ||| |||| ||| || | |||||| | |||||||| Sbjct 55014 TATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAA 55071 Query 36486 ATCCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAA 36544 | | || | ||| ||| || || | || |||| |||| || || | ||||||| Sbjct 55072 AAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAG 55130 Query 36545 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 36604 ||||| | || || || ||||| || ||||| || || || || | ||| ||||||| | Sbjct 55131 TTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGT 55190 Query 36605 TTTTCGTTTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 36662 |||| ||| || || | | |||||| | |||||| | || ||| | |||| Sbjct 55191 CTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTT 55248 Query 36663 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699 | |||||||||||| || || ||||||||||| Sbjct 55249 CAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 55285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172693046920