Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4 248 8e-61 >seq4 Length=1181719 Score = 248 bits (274), Expect = 8e-61 Identities = 593/875 (68%), Gaps = 39/875 (4%) Strand=Plus/Plus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||||||||||| |||||| ||||| || |||||||||||||||| ||||| ||| | Sbjct 54454 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 54513 Query 13430 CCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATA 13489 |||| |||| || ||||| | | | | ||| | | | | | || | || Sbjct 54514 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 54573 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA-TTCATACCTATTAGT 13548 |||||||||||| ||| ||||||||||| | ||| || || | |||||||| || || Sbjct 54574 ATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATAAGA 54632 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608 | ||||||| | | | ||| | | |||| | ||||| || ||| || Sbjct 54633 TCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATT 54692 Query 13609 ATCTTAATAATGTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACAC 13662 | || || | | || || || | |||| || |||| | |||||||| Sbjct 54693 -TGTTG-TACTCT----AGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACAA 54746 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 ||||| ||| ||| || || ||||| | |||||||||||| || |||||||| | ||| Sbjct 54747 GCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCA 54806 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATAT 13781 ||||| | ||| |||||||| | |||||| |||||| | || | | || ||||| | || Sbjct 54807 GGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAAT 54865 Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATAT 13841 ||| ||||| ||| || | || | || ||| |||| ||| || || || Sbjct 54866 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAATT---CAT 54922 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 |||||| | |||||||| | ||| ||||||| | || || ||||| | || Sbjct 54923 CCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAAA 54982 Query 13902 TA-AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 13960 | || | | | |||||| || | ||| ||| ||||||||||||| ||| ||| Sbjct 54983 GAGCATTTGACGT-TCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTTT 55041 Query 13961 CAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14020 || ||||| | ||| |||| || |||||| ||||| | ||| ||||||| || Sbjct 55042 CACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATTT 55101 Query 14021 GTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 ||| || | | |||| || |||| |||||||| ||||||| |||||||| || ||| Sbjct 55102 GTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGCA 55160 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA---TTGTTGAGTTTTTTCCAA 14136 || ||||| || | || ||| ||||| || || |||| | || || ||| |||| Sbjct 55161 AAGAATGCTAAGACGTATTTGATAAA--ATGTCT-TTCAGGGTCTTTAAGACTTTCCCAA 55217 Query 14137 TCGGCTA-AATC----CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 || ||| ||| |||||| |||| ||||| ||| |||||| || ||| Sbjct 55218 TC-TCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATGCTTCAG 55272 Query 14192 CTTTTTTATACATTACCCATATTTCTTTATATAAT 14226 |||||||||||||| ||| || |||||| |||| Sbjct 55273 CTTTTTTATACATTGACCAAATATCTTTAATTAAT 55307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588722229320