Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 279 7e-70 >seq4 Length=1181719 Score = 279 bits (308), Expect = 7e-70 Identities = 1159/1813 (64%), Gaps = 30/1813 (2%) Strand=Plus/Minus Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||| || ||||||||||||||||| |||| || |||||||||||| | || || Sbjct 333482 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 333423 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 | | || ||| || | || || || |||| || || |||| | | | || Sbjct 333422 TGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACC 333363 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 71017 ||| ||||||||||| | || | |||||||| |||||||| | ||| ||||||| Sbjct 333362 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAG 333303 Query 71018 CTCGCTTAATATCTTCTGGAA-GGT--TTGTATTCTGAATGGATCCACCATCTGCAATAA 71074 ||| | | ||||| || |||| || | |||| ||||| ||| || |||||||| Sbjct 333302 CTCACGT-ATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAA 333244 Query 71075 TCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAG 71134 | | | || | | |||| |||||| ||| |||| | | || | || | Sbjct 333243 TATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCG 333184 Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACG 71194 |||| ||||| || || ||||| | ||| |||||| ||||| || ||| | | Sbjct 333183 GATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATG 333124 Query 71195 GTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 | || | |||||| || || |||||||| | ||| ||||| || ||||| || | | Sbjct 333123 GCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATA 333064 Query 71255 CCAATAGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATT 71312 ||||||| ||| | || ||||| | | || || ||||||| || || ||||||| Sbjct 333063 TCAATAGAGAATTACGAATACCATAT--TTGGAAATCCTATCTTTAAGCGAATCCCAATC 333006 Query 71313 CCAAAGATCCGA---TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC 71369 ||||| | || |||| ||| || || ||||| || Sbjct 333005 ACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGC 332946 Query 71370 GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTC 71429 || || | |||||| |||||||| || | |||||| || || ||||| || || || Sbjct 332945 AGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATC 332886 Query 71430 TAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCT 71489 | ||| ||||||| || ||| || || | ||||| | | | ||| || Sbjct 332885 GAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGA 332826 Query 71490 ATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCG 71547 || |||| ||| ||| | || || |||||| | ||||||| |||||| || Sbjct 332825 CTCGTATGGCATA--CGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCC 332768 Query 71548 ATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 71607 | || | ||||| ||| || ||| | |||| || || |||||| || || Sbjct 332767 AATGGACGATGTCTTAAATTCGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCA 332708 Query 71608 ATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCA 71667 || | |||||| | ||| || || || || || || |||| || ||||||| Sbjct 332707 ATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCA 332648 Query 71668 AA--TCTCCCATCTATTACAAAC--ACGTT-CAAGG-CAACAGATGCCAGATTACAAACG 71721 || ||| | ||| ||| || || |||| ||| ||| ||||||||||||||| Sbjct 332647 AACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACG 332588 Query 71722 GCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGA 71779 || || || | | || | |||| ||| ||||| ||||| | ||||| | | Sbjct 332587 GCAACTTCGTCCTTGC--TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAA 332530 Query 71780 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACG 71839 | ||||| ||||||| || ||||| || | || ||||| |||||| |||||| | Sbjct 332529 TAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATG 332470 Query 71840 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATT 71898 | || || || ||||| |||| | || || ||| | | || | || || || Sbjct 332469 GTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATC 332411 Query 71899 ATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCC 71958 | ||| | | || | | || || | | ||||| | || || || ||| Sbjct 332410 GTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCC 332351 Query 71959 CAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCA 72018 ||| ||| | ||||| ||||||| || ||||| | | ||| ||| ||| | Sbjct 332350 CAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTC 332291 Query 72019 TTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTA 72078 | |||| || ||| || |||||||||| |||||| || ||| ||||| | ||| Sbjct 332290 TCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTC 332231 Query 72079 TGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 72138 ||| || ||||| |||||| ||| || | ||| | | || |||| ||||| Sbjct 332230 ATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCAT 332171 Query 72139 GGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 72198 |||||||| || || || || | || || || ||| || ||||| || || ||| Sbjct 332170 GGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTA 332111 Query 72199 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 72258 || |||| ||||||||| | || ||| ||||| | ||||| ||| ||||| || || Sbjct 332110 GCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCT 332051 Query 72259 GAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 ||||| ||| | | | |||||| || | || | || | || ||||| | Sbjct 332050 CGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTC 331991 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 ||| || ||||||| ||| || ||| |||| || | ||| ||| || Sbjct 331990 TTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGA 331931 Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 || | |||| |||||| |||||||| | || || || | |||||| | || Sbjct 331930 ATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTG 331871 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || | || || ||||| |||||| || | | | || || |||| || | ||| Sbjct 331870 GGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCA 331811 Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558 ||||| | ||| || || | || ||||| | | ||| || |||||||| || Sbjct 331810 ATATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACA 331751 Query 72559 ATCTTGTTATTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 72617 | ||||| | ||||| || ||| |||||| |||| | |||||| || ||||||| | Sbjct 331750 ACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATC 331692 Query 72618 GTATGAAAAGTCT 72630 ||| ||| ||| Sbjct 331691 ATATTCAAAATCT 331679 Score = 219 bits (242), Expect = 6e-52 Identities = 597/895 (67%), Gaps = 47/895 (5%) Strand=Plus/Plus Query 41749 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 41805 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 54425 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 54484 Query 41806 ATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA 41865 ||||| || |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 54485 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 54544 Query 41866 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTT 41925 |||||| || |||| || ||| |||||||| || | ||||| |||||| Sbjct 54545 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 54604 Query 41926 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 41985 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 54605 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 54664 Query 41986 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA----T 42041 ||||| || || |||| ||| || | |||| | | | ||| | Sbjct 54665 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCT------AGGAGCTGGTAATTT 54718 Query 42042 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCATCTCTAC 42098 | | | || | |||| | || ||||| || || || ||| || ||||| ||||| | || Sbjct 54719 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 54777 Query 42099 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 42158 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 54778 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 54837 Query 42159 TAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 42217 | | | |||| | | |||||||| | |||||||| || || || |||||| ||| Sbjct 54838 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 54896 Query 42218 TCTCCATAACCGGCACTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 42274 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 54897 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 54953 Query 42275 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 42330 ||| || || | || || | |||||| | ||| ||| |||| | Sbjct 54954 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGT 55009 Query 42331 AACATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATC 42388 || |||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 55010 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 55067 Query 42389 TGAAATCCGTAGAAACA-TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGC 42447 ||||| | || | ||| |||||| || | | |||| |||| || || | | || Sbjct 55068 TGAAAAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGC 55126 Query 42448 TAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 42507 ||| ||||| | || || || ||||| || ||||| || || || || | ||| ||||| Sbjct 55127 TAAGTTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAA 55186 Query 42508 ATATTTTTCGTCCGGTGTT--AATTTATTCCAATCATTGATATCTTTAGATATATCTACT 42565 || | |||| ||| || | | | |||||| | |||||| | || ||| | Sbjct 55187 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATC 55244 Query 42566 TCTTC--TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATC 42618 ||||| || | ||||||||||||||| || ||||||||||| ||| ||||| Sbjct 55245 TCTTCAGTAAC--CCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 55297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139090939880