Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4 172 5e-38 >seq4 Length=1181719 Score = 172 bits (190), Expect = 5e-38 Identities = 575/871 (66%), Gaps = 43/871 (5%) Strand=Plus/Plus Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 |||||||||| | |||||| ||||| || ||||| ||||| |||| | |||||| | Sbjct 54454 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 54513 Query 12921 CCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT----ACACCCTAATTCTAGT 12976 |||| |||| |||||||| ||| | ||| |||| | | || || | | Sbjct 54514 CCATCCAATCAAAAGGATTA---GAAACGTTGTAGATTTTTGGAATATCC-AAGGCAAAA 54569 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC-AGTTCATTCCTAT 13035 | ||||| ||||||||||| || || || || ||| || || ||||||| || || Sbjct 54570 AGTAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAAT 54628 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 | | ||||| | || || | ||||||| |||| | ||||| ||||| | | Sbjct 54629 AAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGA- 54685 Query 13096 TATGTCTCTTATTACGTTCTCTAATGGAGG-----ATTTGA---TAGATGCTTAA-ACAT 13146 |||| | | || || ||||| |||| |||| | || |||| | | || Sbjct 54686 TATGATT--TGTT--GTACTCTA--GGAGCTGGTAATTTAAATTTAAGGGCTTTATATAT 54739 Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 | ||| ||||| ||| || | |||||||| | ||| || || || || |||||||| Sbjct 54740 TAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGT 54799 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaa 13266 || || |||||||| || |||||||||| |||||| || ||| ||| ||| ||||| Sbjct 54800 GAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAA 54859 Query 13267 aaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACT 13326 | ||||||||||| || || | || | |||||| || | | | || | Sbjct 54860 TAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATC---GTTCAGA 54916 Query 13327 CTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTC-ATATTTTCTATT 13384 | ||||| || | ||||| | |||||| | |||||| || ||| |||| ||| Sbjct 54917 ATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGC--TTCAATATGAGAAATT 54974 Query 13385 GCGTTAAATAAATAAttt--ttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC 13442 || | || | | |||| ||| ||| | || |||||| |||| || | ||| Sbjct 54975 GCTTCAA--AGAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATG 55032 Query 13443 TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCT 13502 ||| |||| ||| || | ||| || | ||||| ||| ||||| | ||| || | Sbjct 55033 AATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTT 55092 Query 13503 CTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 ||| || || | ||| | |||| || ||||||||||||| |||| || || ||| Sbjct 55093 CTGGTATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCA 55151 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC-GTTTTCTGACAACTT 13620 || |||||||| || || | | || || ||||| | | |||| | | | | |||| Sbjct 55152 CTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTT 55211 Query 13621 TAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAAC 13680 | ||||||| | ||||| || ||| | ||| ||| |||||| || || | Sbjct 55212 T-CCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTC 55270 Query 13681 AGCCTTCTTATACATCATCCATATATCCTTA 13711 ||| || |||||||| ||| ||||| ||| Sbjct 55271 AGCTTTTTTATACATTGACCAAATATCTTTA 55301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982331716226