Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq13 158 1e-33 seq7 129 5e-25 >seq13 Length=1060481 Score = 158 bits (174), Expect = 1e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||||||||| ||||| || || || || ||||| | ||||| ||| | Sbjct 489366 AAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACC 489307 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||||| | || || | || ||| ||||| || ||||| || || ||||| || Sbjct 489306 TTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGA 489247 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||||||| | || ||||| || ||||| ||||||||| | || |||| ||||| Sbjct 489246 TCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTA 489187 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 ||||||||||||||| ||||| |||| ||||| ||| || Sbjct 489186 CAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGA 489147 Score = 154 bits (170), Expect = 1e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||||| || || || || ||||| | ||||| ||| | | Sbjct 489134 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 489075 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| |||||||| |||||||| || ||||| |||||| Sbjct 489074 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 489015 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||||||| | || |||| || |||||| Sbjct 489014 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 488955 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||||||||||| || || |||||||||| ||| Sbjct 488954 ATTCAAAAAGAGTCTACTTTACATTTAGTATTG 488922 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| ||||| || || || || ||||| | ||||| ||| | | Sbjct 488906 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 488847 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| ||||| || ||||| || || ||||| |||||| Sbjct 488846 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 488787 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||||||| | || |||| ||||||||| Sbjct 488786 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 488727 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 ||||||||||| ||||| |||| ||||| ||| || Sbjct 488726 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGA 488691 >seq7 Length=1353434 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||| ||||||||||| || || || |||| | ||||| ||| | Sbjct 627741 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 627682 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | || || | || ||| || || || |||||||| ||||| || ||| Sbjct 627681 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGAT 627622 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||||| || ||||| || || || || || ||| | || | || || ||| Sbjct 627621 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 627562 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 || || || || || ||||| | |||||||| ||| || Sbjct 627561 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAGA 627523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727933499345