Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq13 143 2e-29 seq7 122 6e-23 >seq13 Length=1060481 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| || ||||| || | || || |||||||| ||||||||||| | Sbjct 489136 CCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 489195 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || ||| Sbjct 489196 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 489255 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||| || ||| ||||| || ||| | || || ||||| | ||| || Sbjct 489256 ATTCCTTCCTTATCCTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 489314 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 || || || || || || ||||||| ||| || |||||||| |||||||||| Sbjct 489315 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTG 489367 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | || || |||||||| | ||||| |||||||| |||||||| || | Sbjct 488908 CCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 488967 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || ||| Sbjct 488968 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 489027 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| ||||| || ||| ||||| || ||| | || || ||||| | ||| || Sbjct 489028 ATTCCCTCCTTATCTTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 489086 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || ||||||| ||| || |||||||| |||||| Sbjct 489087 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCATA 489135 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| || ||||| || | || || |||||||| ||||||||||| | Sbjct 488680 CCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 488739 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || ||| Sbjct 488740 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 488799 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||| || ||| ||||| || ||| | || || ||||| | ||| || Sbjct 488800 ATTCCTTCCTTATCCTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 488858 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || ||||||| ||| || || ||||| |||||| Sbjct 488859 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCATA 488907 >seq7 Length=1353434 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| || |||||||| | || || || || || || ||||| || Sbjct 627512 CCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 627571 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| ||||| || ||||| | |||| ||||||||| || ||| Sbjct 627572 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 627631 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || ||||| || || ||||| ||| ||| | || ||||||||| | ||| || Sbjct 627632 ATGCCCTCCTTATCCTGGATCTTTGCCTTT-ACATTCTCAATAGTATCGGAAGGTTCAAC 627690 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || ||||| | |||||| |||||||||||||| || Sbjct 627691 TTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 627741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391943375705