Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq4 241 2e-58 >seq4 Length=1181719 Score = 241 bits (266), Expect = 2e-58 Identities = 592/886 (67%), Gaps = 45/886 (5%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||||||||| |||||||||| ||||||| ||||||| || || || || |||| Sbjct 54440 CATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTG 54499 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 ||||| ||| ||||| ||||||| |||||||| || || || | | || | Sbjct 54500 AAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGA-AT-A 54557 Query 36992 T--AATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAG 37049 | || | || | ||||| ||||||||||| || |||| ||| ||| || Sbjct 54558 TCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAG 54617 Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACA 37109 || |||||||| || | || |||| | || |||||| | |||| | | ||| Sbjct 54618 TTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACA 54677 Query 37110 GCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGG--GATATTTTAAATAT---- 37163 || ||| |||| | | || | | | || | | || ||||||| | Sbjct 54678 GCTTCTG-----ATATGA----TTTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGG 54728 Query 37164 ---TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220 ||| | | |||||| ||||| ||| ||| | ||||||||| | ||| || | |||| Sbjct 54729 GCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCA 54788 Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280 |||||||| || | ||| ||||| | || | |||||||| |||||| ||||| ||||| Sbjct 54789 TTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAA 54847 Query 37281 GAT-CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339 | | |||||||| | ||| |||||||| || ||| | | || | | | | |||| Sbjct 54848 GCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGA 54907 Query 37340 TGAACTATAATCAGAA---ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC 37396 | |||||| |||||||| ||| ||| ||||| || ||||||| ||| Sbjct 54908 TCGT------TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTC 54961 Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456 ||| |||||||| ||||| | | ||||| | |||| || ||||| |||| Sbjct 54962 AATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATATATCTATC 55021 Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 ||| ||||| ||| ||||| || || | |||||||| || |||||| ||||| | Sbjct 55022 AATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATA 55081 Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576 || ||||| | || ||| | || ||| || | ||||||||||| |||| Sbjct 55082 CATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAAC 55141 Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TC 37633 || |||||||| || |||||||| || | || ||||| ||||||||||||||| || Sbjct 55142 AATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTC 55201 Query 37634 ATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAA---CTTCATCAACGGT 37690 ||| | | ||| |||||| || |||||| || ||||| ||||| ||| Sbjct 55202 -TTTAAGA--CTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAAC--- 55255 Query 37691 CCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTA 37736 |||||| ||| || ||||||||| | ||||||||| ||| Sbjct 55256 CCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATCTTTA 55301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316703748520