Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4 165 2e-35 seq13 154 3e-32 seq7 154 3e-32 >seq4 Length=1181719 Score = 165 bits (182), Expect = 2e-35 Identities = 477/729 (65%), Gaps = 22/729 (3%) Strand=Plus/Plus Query 49649 TAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAA 49708 ||||||||| || |||||||||| |||||| | ||| | | | |||||||| ||||| Sbjct 54572 TAATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACC-AATAA 54630 Query 49709 TTTAAATGGTAATGCA-TCATCAATAAATTCtttttctatttctacagcttgtttaatta 49767 | || | || | ||| || ||| | | |||| | ||| ||||||| | || | Sbjct 54631 GATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGA 54690 Query 49768 tcataattatattattttt--tgataatttatatttaatatgattcgcatatattaaACA 49825 | | || || | | || ||||||| |||||| || |||||||||||| Sbjct 54691 T--TTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTT---ATATATTAAACA 54745 Query 49826 TGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 49885 ||||| |||| ||| | ||| || || | | |||| ||||||| ||| || | ||| Sbjct 54746 AGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 54805 Query 49886 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 49945 ||||| | ||| | |||||||||||||| |||| ||| |||| |||||| | || Sbjct 54806 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 54865 Query 49946 ACCCTCGACACACGCA-AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATA 50004 || || ||| | || ||| | || |||||| | |||| | || | || | Sbjct 54866 TCCTTCAACAG-CACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAATTCA--- 54921 Query 50005 TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 50064 |||| || | ||||| |||||||| ||||| | || |||| || |||| || Sbjct 54922 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAA 54981 Query 50065 ATAATTCAttttt--ttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACAT 50122 | | ||||| ||| | || | ||| ||||| | Sbjct 54982 AGAG--CATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGT 55039 Query 50123 TTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATA 50182 |||| ||||| ||| |||| |||||||| | |||| | ||| ||||||| Sbjct 55040 TTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTAT 55099 Query 50183 CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 50242 || | ||| || ||| | | |||| || || ||||| |||||| ||| || Sbjct 55100 TTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGC 55159 Query 50243 GAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGA 50302 ||||||||||| |||||||| ||||||||| ||||| ||||| | | |||||||| Sbjct 55160 AAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAATC 55219 Query 50303 TTCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTT 50360 | | ||| |||| || ||| | ||||| | ||||||||||||| | | |||| Sbjct 55220 TCTAGTATC--TTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTTTT 55277 Query 50361 TTATACATT 50369 ||||||||| Sbjct 55278 TTATACATT 55286 >seq13 Length=1060481 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | ||||||||||||||||||| |||||| || || || ||| Sbjct 488905 ATACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCA 488964 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || |||||||| || |||||||| || | |||||||||||| Sbjct 488965 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 489024 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || || || ||||| || | |||||| | ||| Sbjct 489025 GGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 489084 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || || || || || || || || | ||| |||||||| Sbjct 489085 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 489134 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||||||| | || ||||| |||||||| | |||||| || || |||||| Sbjct 489133 ATACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 489192 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || |||||||| || |||||||| || | |||||||||||| Sbjct 489193 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 489252 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || || || || ||||| || | |||||| | ||| Sbjct 489253 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 489312 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||| || || || || || || || |||| ||| |||||||| || Sbjct 489313 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 489365 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||||||| | || ||||| |||||||| | |||||| || || |||||| Sbjct 488677 ATTCCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 488736 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || |||||||| || |||||||| || | |||||||||||| Sbjct 488737 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 488796 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || || || || ||||| || | |||||| | ||| Sbjct 488797 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 488856 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || || || || || || || |||| || |||||||| Sbjct 488857 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 488906 >seq7 Length=1353434 Score = 154 bits (170), Expect = 3e-32 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| | ||| |||||||| | ||||||||||| ||||| | ||| || |||||| || Sbjct 627505 AATTACACCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTA 627564 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||||||| |||| |||| |||||||| || ||||||||||| | | ||||||||| Sbjct 627565 GTCAGATAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATC 627624 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||| || || || || ||||| || || || |||||||| |||| ||| || | Sbjct 627625 AGGAGGAATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGG 627684 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 ||| ||||| | || ||||| || || ||||| ||||| | ||| || ||||| || || Sbjct 627685 TTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTTCTT 627744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479836022550