Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13 132 4e-26 >seq13 Length=1060481 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| |||| || | || || || ||||| || | ||||| ||| | | Sbjct 489362 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 489303 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||| || || || |||||||| || || |||||| Sbjct 489302 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 489243 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || ||||| | |||||| |||| | || ||||| ||| Sbjct 489242 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 489183 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||| || || || ||||||| || ||| || Sbjct 489182 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGA 489147 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| || | || || || ||||| || | ||||| ||| | | Sbjct 488906 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 488847 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||| || || || |||||||| || || |||||| Sbjct 488846 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 488787 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || ||||| | |||||| |||| | || ||||| ||| Sbjct 488786 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 488727 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||| || || || ||||||| || ||| || Sbjct 488726 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGA 488691 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || || ||||| || | ||||| ||| | | Sbjct 489134 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 489075 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||| ||||| || || ||||| || || |||||| Sbjct 489074 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 489015 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || ||||| | |||||| |||| | || || || ||| Sbjct 489014 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 488955 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 |||||||| || || || |||| || || ||| Sbjct 488954 ATTCAAAAAGAGTCTACTTTACATTTAGTATTG 488922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897526891640