Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq13 113 3e-20 >seq13 Length=1060481 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| |||||||||||||| ||||| | | || | | ||| || | |||||| || Sbjct 489166 GTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCT 489225 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | ||||| | ||| ||||| || || || || || || || || ||| |||| || Sbjct 489226 GCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTG-AATCTTTGCCTT 489284 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || ||| |||| ||||| | ||| ||||| || || || || || Sbjct 489285 AACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGT 489344 Query 29769 TTTAACAAATATCTGCATTTT 29789 |||||||| |||||||| || Sbjct 489345 CTTAACAAAAATCTGCATATT 489365 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| | || || |||||||||||||| || || | | || | | ||| || Sbjct 488926 ACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCT 488985 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| || ||| | ||||| | ||| ||||| || || || ||||| || ||||| Sbjct 488986 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTG- 489044 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| || ||| | || | || || ||| |||| ||||| | ||| ||||| || Sbjct 489045 AATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTT 489104 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| |||||||| Sbjct 489105 TCCTGTCAAAGTCTTGACAAAAATCTGCAT 489134 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| |||||||||||||| ||||| | | || | | ||| || | |||||| || Sbjct 488710 GTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCT 488769 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | ||||| | ||| ||||| || || || || || || || || ||| |||| || Sbjct 488770 GCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTG-AATCTTTGCCTT 488828 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || ||| |||| ||||| | ||| ||||| || || || || || Sbjct 488829 AACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGT 488888 Query 29769 TTTAACAAATATCTGCAT 29786 ||||| || |||||||| Sbjct 488889 CTTAACGAAAATCTGCAT 488906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219138966833