Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 347 2e-90 >seq4 Length=1181719 Score = 347 bits (384), Expect = 2e-90 Identities = 1176/1818 (65%), Gaps = 34/1818 (2%) Strand=Plus/Minus Query 68412 ATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTT 68471 ||| || || || ||||| |||||| |||| || || ||||||||| || || || Sbjct 333482 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 333423 Query 68472 GGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCC 68531 | | | | | || | ||||| || |||| ||||| |||| | | | || Sbjct 333422 TGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACC 333363 Query 68532 TCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAAT 68591 |||||||| ||||| | || | ||||||| |||||||| | ||||||| ||| Sbjct 333362 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAG 333303 Query 68592 CTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAAT 68648 || ||||| || |||| | |||||||||| ||| || | ||||| Sbjct 333302 CTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAAT 333243 Query 68649 TATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGG 68708 | | ||| | | ||||| ||| || ||| |||| | | || | ||||| Sbjct 333242 ATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGG 333183 Query 68709 ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGG 68768 ||| |||| || || ||||||| || |||||| ||||| || ||| |||| Sbjct 333182 ATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGG 333123 Query 68769 TTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 || | | ||||| || || | |||||| | ||| ||||| |||||||| || | | Sbjct 333122 CTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATAT 333063 Query 68829 CAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCA 68888 ||||| | ||| | || ||||| | | || ||||||| || | |||||| || Sbjct 333062 CAATAGAGAATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACA 333003 Query 68889 AAGATCAGA---TGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATA 68945 ||| |||| |||| ||| ||| | ||| |||||| ||| || ||||| ||| Sbjct 333002 AAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGG 332943 Query 68946 TGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAA 69005 || || ||||||||| || || || | | ||| || || ||||| || || || | Sbjct 332942 CGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAG 332883 Query 69006 TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCT--AGACTA 69063 || | ||||| || ||| || || | ||||| | | | ||| | ||||| Sbjct 332882 AGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACT- 332824 Query 69064 TCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATA 69123 || |||| | | | | || || ||||| | || |||| ||||| || | Sbjct 332823 -CGTATGGCATACGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAAT 332765 Query 69124 GGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 69183 || | |||||| ||| || ||| | |||| || || |||||| || || || Sbjct 332764 GGACGATGTCTTAAATTCGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATC 332705 Query 69184 ATTTTATTAAGATT--TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAA 69241 | |||||| | ||| ||| | | || || || || |||| || |||||||| Sbjct 332704 AATTTATTCAAATTCCTCGTAATC--ACCTTCGTAACTTCTTTTAACTTATCAAAATCAA 332647 Query 69242 ATCGTCCATCTAT-------AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACT 69294 | |||| ||| ||| ||| | || | | ||| || ||||||||||| Sbjct 332646 A-CGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACG 332588 Query 69295 GCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATA 69354 || || || | | | |||| ||| || ||||| |||| ||||| | ||| Sbjct 332587 GCAACTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATA 332528 Query 69355 GTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGA 69414 || |||| ||||| ||| ||||| || | || || || || ||| |||||| || Sbjct 332527 GTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGT 332468 Query 69415 GTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACG 69474 || || || ||||| |||| | | || | ||||| | || || || || Sbjct 332467 GTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAAGTTTCTGCGCTTTCAT--CG 332410 Query 69475 GT---CTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCC 69531 | ||| | || | | ||| ||||| | | ||||||| | || ||||| ||| Sbjct 332409 TTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCC 332351 Query 69532 CAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCC 69591 |||||||| | |||||| ||||||| ||| ||||| | | ||| | | ||| | | Sbjct 332350 CAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTC 332291 Query 69592 TTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTA 69651 | ||||| || ||| || ||||| |||| |||||| || ||||||||| | ||| Sbjct 332290 TCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTC 332231 Query 69652 TTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCAT 69711 | ||||| ||||| ||| || ||| || | |||||| | || |||| |||||| Sbjct 332230 ATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCAT 332171 Query 69712 GGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTG 69771 ||||| | ||| || || ||| | || || || ||| || ||||| || || || Sbjct 332170 GGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTA 332111 Query 69772 GCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831 ||||||| |||||| || | |||||||||||| | ||||||||| | ||||||||||| Sbjct 332110 GCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCT 332051 Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATT 69891 |||||| || || | | ||||||||| | | | || | || ||||| | Sbjct 332050 CGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTC 331991 Query 69892 TTA--GAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTA 69949 ||| | || | ||| ||| | ||||||| | ||||| | ||| ||| ||| Sbjct 331990 TTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGAATCTTCTG 331933 Query 69950 TCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATG 70009 || | || | |||||| ||||||||| | | || || | |||||| | || Sbjct 331932 GAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTG 331873 Query 70010 TAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATT 70069 | || | ||| ||||| || |||||| || | || | |||||||||| || | || Sbjct 331872 TGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTT 331813 Query 70070 CTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 | ||||| |||| |||||| || | || ||||||| | ||| || |||| ||| Sbjct 331812 CAATATCACCAC-AATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCC 331754 Query 70129 ACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAG 70188 || ||| || | ||||| | || || ||| |||| |||||||| || ||||||| Sbjct 331753 ACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAA 331694 Query 70189 TTGTATGAAAAGTCTCTT 70206 | ||| ||| ||| || Sbjct 331693 TCATATTCAAAATCTTTT 331676 Score = 241 bits (266), Expect = 2e-58 Identities = 588/878 (67%), Gaps = 15/878 (2%) Strand=Plus/Plus Query 39302 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAA 39358 || ||||| |||| |||||||| |||| ||||||||||| | || ||||| || Sbjct 54426 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 54485 Query 39359 TTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt 39418 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| | || || Sbjct 54486 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 54545 Query 39419 ttttttttAA-ATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTT 39477 ||||| || |||| || | ||| |||||||| ||||||||||| || ||| Sbjct 54546 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 54604 Query 39478 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTT 39537 ||| | | | ||||| || || || | ||| || |||| || ||||| | | | Sbjct 54605 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 54664 Query 39538 TTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAA 39597 ||| | || || || |||| ||| || | |||| || || ||| | || Sbjct 54665 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACT--CTAGGAGCT-GGTAATTTAAA 54721 Query 39598 TAAATG---TTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAAT 39654 | | | |||| | ||||| || || |||||| ||| || || ||||| | |||||| Sbjct 54722 TTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAAT 54781 Query 39655 TAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGC 39714 | ||| ||||||||||||||||||||||| || ||||| ||||| |||||||| || || Sbjct 54782 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGC 54841 Query 39715 AGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTC 39773 | |||||| | |||||||| | || ||||| || || ||| ||| || ||| || Sbjct 54842 A-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 54900 Query 39774 CGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 | || | ||| || ||||| || |||||| || |||||||| || ||| Sbjct 54901 CAAAAGATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTT 54960 Query 39834 GCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTAT 39893 || || || | |||||| || ||| | | |||| ||| |||| ||| Sbjct 54961 CAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATATATCTAT 55020 Query 39894 CTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAA 39953 | || | | ||| |||| ||| || | |||||| | ||| ||||| | ||| Sbjct 55021 CAATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAAT 55080 Query 39954 AACATCTTGCTTCAGTAATTTGTACCTCT-GAACAAAATCTTTCCGCCAAATTTTCATTC 40012 | ||| ||||| | ||||||| ||| || |||| || | || || ||||| | Sbjct 55081 ACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATA 55139 Query 40013 ACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG 40072 || || |||||||| || ||||| ||||| || || | ||| ||||||| | ||||| | Sbjct 55140 ACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGG 55199 Query 40073 GGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 40132 | | | | | ||| || | |||||| || ||| | ||||||| |||| Sbjct 55200 TCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAA 55259 Query 40133 AACGACGCCTCTGCCTTTTTGTACATGTTCCATATATC 40170 || || || || || ||||| ||||| ||| ||||| Sbjct 55260 AATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 55297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908688377320