Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 138 1e-27 >seq4 Length=1181719 Score = 138 bits (152), Expect = 1e-27 Identities = 832/1305 (64%), Gaps = 48/1305 (4%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || ||||| | ||| |||| ||||| | ||||| ||||| || ||||||| ||||| Sbjct 333142 TAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGAT 333083 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 |||||||||||||| | ||||| ||| ||||||| ||| | | || | || Sbjct 333082 GCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATACCATATTTGGAAATCCTATCT 333023 Query 110828 TTGAGAACATCCCAGTCGTA--GTT--GAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 || || |||||| || | || ||| |||| | || | ||||||| ||||| || Sbjct 333022 TTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTAAC-TCCCCACATATCAAATTG 332964 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 | | || | ||| || ||||| | | ||||| || | ||| | ||| || Sbjct 332963 TAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGC 332904 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | |||||||| || || || | ||| | ||| || ||||||||| | ||| | Sbjct 332903 AAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAA 332844 Query 111004 CTCCTTGGCTTCATCTGAATCAAATG-CGTAGCGGCACAAAATAAATACA-TCCGCGAGA 111061 || ||| ||| | || || || ||| | || || || || || ||| || ||||| Sbjct 332843 CTTCTTAGCTCCCTCAGACTCGTATGGCATA-CGAAGCATCATGAA-ACAGTCTGCGAGC 332786 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG 111121 ||||||| || | || | || | |||| | ||| || ||| || ||| | | Sbjct 332785 CCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTCGAGTTTTTA-CATTCTTTAAG 332727 Query 111122 GGATAAAAATTTCT---GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || | ||| || |||||| | | || | ||| | |||| | ||| || | | Sbjct 332726 AGA--ATAATATCCAACGTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACT 332669 Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 111238 || | | || ||| ||||||| || | | || || || ||||||||||| | Sbjct 332668 TCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCA 332609 Query 111239 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 111298 || || |||| ||| ||||| || || ||||| ||||| |||| |||||||| Sbjct 332608 ATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTG 332549 Query 111299 CATAAG----TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT-CTTGTTGC 111353 |||||| ||| ||| ||| || |||||||| || |||||||| || || |||| Sbjct 332548 CATAAGTTACTTGAAAC----AATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGC 332493 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG-ATTTGAGAATAGCC 111412 | ||||| || || || | || ||||||||||| | || | | | ||| || Sbjct 332492 A-GCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGA 332434 Query 111413 TTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTG 111472 | || || ||| | | | | || | || || | ||| |||| | Sbjct 332433 ACCAAAGTTTCTGCGCTTTCATCGTTTTCCTT-CCACGGCCTTGTTTCTCATACTCTTCA 332375 Query 111473 TAGAGGGCTTC--AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGA 111529 || | ||||| ||| || || ||| | || | | | ||| || ||||| Sbjct 332374 TATA--GCTTCTTAAAATCATCGCCCCAAACATC-TTGCAATCCCCTGCATTCATCTGGG 332318 Query 111530 CAGAAAAGAGACCA---TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 || | |||| ||| |||| |||| |||||| | | |||||| || || |||| | Sbjct 332317 CACATTAGAGTCCAATCTTGA--TCCTT-CTCAACTCTTTCCATGAACAGATCAGGAACC 332261 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA- 111645 || |||| | ||||||||| | ||| | |||||| | || || || || ||| Sbjct 332260 CAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCATGATT-CTTCCTAAT 332202 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705 |||| ||||| | | ||| |||||||||| || | ||| | ||| || | || || Sbjct 332201 TTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTT 332142 Query 111706 TCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 || | ||| |||||| | ||| | || ||| | ||| | ||||| ||||| || Sbjct 332141 ACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGG 332082 Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 111822 ||| | |||| ||| |||||||| || |||||| || | | |||| | || Sbjct 332081 AATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATT 332022 Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTT--TGAGATTTGCGCACACTCCGTAAGA 111880 | | || ||||| || || || ||| | | |||||| || | || || Sbjct 332021 ACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCG--CATTTAGTTAGT 331964 Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940 || || |||||||||| ||||| || || | || | || ||| ||||| Sbjct 331963 GTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATT 331904 Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985 || |||| || || || | ||| ||||| || |||||||| ||| Sbjct 331903 TGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGA 331859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031897944800