Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq13 145 7e-30 seq7 118 9e-22 >seq13 Length=1060481 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| |||| ||| | ||||| ||||| || Sbjct 489134 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 489075 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| |||||||| || || || || ||||| |||||| Sbjct 489074 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 489015 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || || || | || || |||||| Sbjct 489014 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 488955 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||||| || |||||||| || ||| Sbjct 488954 ATTCAAAAAGAGTCTACTTTACATTTAGTATTG 488922 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| |||| ||| | ||||| ||||| || Sbjct 489362 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 489303 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| ||||| || || ||||| || ||||| |||||| Sbjct 489302 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 489243 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || || || | || ||||||||| Sbjct 489242 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 489183 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||||| || ||||| || || ||| Sbjct 489182 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTG 489150 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| |||| ||| | ||||| ||||| || Sbjct 488906 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 488847 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| ||||| || || ||||| || ||||| |||||| Sbjct 488846 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 488787 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || || || | || ||||||||| Sbjct 488786 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 488727 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||||| || ||||| || || ||| Sbjct 488726 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTG 488694 >seq7 Length=1353434 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| | || || ||| | || || | ||||| ||||| ||| Sbjct 627738 ATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCC 627679 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| || || || || || ||||| || || |||||| Sbjct 627678 GATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGATCAA 627619 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||||||||||| || || | || || ||||| Sbjct 627618 CAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAAT 627559 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || || |||||||| || || ||||| || ||| Sbjct 627558 ATCCAGAAGGAGTCCACTTTGCATTTAGTATTG 627526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918329325760