Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4 178 1e-39 >seq4 Length=1181719 Score = 178 bits (196), Expect = 1e-39 Identities = 568/862 (66%), Gaps = 33/862 (4%) Strand=Plus/Plus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||| ||||| |||| |||||||||||| |||||||| |||| | |||||| | Sbjct 54454 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 54513 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCA 4377 |||| ||||||| ||||||| ||||||| |||| | | | || | ||| | Sbjct 54514 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 54573 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-AT 4436 ||| ||||| |||||||| ||||| ||| ||| ||| |||| || ||||| | || Sbjct 54574 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGAT 54633 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 | ||||| || | || | ||| | | ||| | || ||||||| || || Sbjct 54634 CA-ACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATT 54692 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTAC---TAAGTA-TCCAAACAATAAACACGC 4552 | || || | || || |||| ||||| |||| | | | | |||||| || Sbjct 54693 TGTTGTACTCTAGG---AGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACAAGC 54748 Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 ||| ||| ||| | |||||| || | ||||| ||||| |||||||| || | ||| || Sbjct 54749 AAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGG 54808 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 ||| | || | |||||||||||||| || || ||| |||||||| | || || Sbjct 54809 CATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTCC 54868 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCA 4732 ||| || || || | | | |||| | || || | | | | || | |||| Sbjct 54869 TTCAACAGCA-CAGAATCCAATAATTCTTTCAGCAAA-AGATCGTTCAGAATTCA-TCCA 54925 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAAT-TGTGTATATAGCGTTAAATA 4791 ||| |||||| | ||||| || ||||| ||| || | | || || | ||| | Sbjct 54926 TTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAA-ATTGCTTCAAAGA 54984 Query 4792 --ATTT-ACTTTTTTCAA-ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 |||| || || || || || || |||||| | || || |||| ||| || Sbjct 54985 GCATTTGACGTTCTTTAATATCAGT----AATATATCTATCAATAAGTAATGAATAAGTT 55040 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 ||| |||||| | ||| |||| || ||||| | ||| | ||| ||||||| || | Sbjct 55041 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATT 55100 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 || | ||| || || || || |||||||||| | || || || ||||| || ||| Sbjct 55101 TGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGCA 55160 Query 4968 AAAAACGCCAAAAC--ATGAGATATAAAGTACTGTTCGTCAGGCT---TAAGTTTTTTCC 5022 || || || || || || |||| || || | ||||| | |||| ||| || Sbjct 55161 AAGAATGCTAAGACGTATTTGATAAAATGTCTT-----TCAGGGTCTTTAAGACTTTCCC 55215 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 | | ||||| | ||| ||||| |||||| | |||||| || ||||| |||| Sbjct 55216 AATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTT 55275 Query 5083 TTTTGTACATAGACCAAATATC 5104 |||| ||||| ||||||||||| Sbjct 55276 TTTTATACATTGACCAAATATC 55297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049532339329