Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 351 1e-91 >seq4 Length=1181719 Score = 351 bits (388), Expect = 1e-91 Identities = 1176/1811 (65%), Gaps = 26/1811 (1%) Strand=Plus/Minus Query 76820 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTG-TCAGTT 76878 ||| || || || ||||||||||| |||| || || |||||||| || | | || Sbjct 333482 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 333423 Query 76879 TGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTC 76938 || || | ||| || | ||||| || |||| || || |||| | | | | Sbjct 333422 TGCAA-AGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGAC 333364 Query 76939 CTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAA 76998 | ||||| || ||||| | || | |||||||| |||||||| | ||| || ||| Sbjct 333363 CCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAA 333304 Query 76999 CTTGTTTGATATCATCTGGAAGGTT---TGTATTTTGAATGGAACCACCATCTGATATAA 77055 | ||||| || |||| | | |||||||||| ||| || || |||| Sbjct 333303 GCTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAA 333244 Query 77056 TTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAG 77115 | | | ||| | ||||| ||| || |||| |||| | | || | || | Sbjct 333243 TATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCG 333184 Query 77116 GATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATG 77175 |||| |||| || || ||||| | ||| |||||| ||||| || ||| ||| Sbjct 333183 GATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATG 333124 Query 77176 GTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCA 77235 | || | | |||||||| || |||||||| | ||| || || |||||||| || | | Sbjct 333123 GCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATA 333064 Query 77236 CCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCC 77295 ||||| | ||| | | ||||| | | || ||||||| || | | |||||| | Sbjct 333063 TCAATAGAGAATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCAC 333004 Query 77296 AAAGATCTGAA---GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCAT 77352 |||| | || ||| ||| |||| | ||| |||||| ||| || ||||| ||| Sbjct 333003 AAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAG 332944 Query 77353 ATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCA 77412 || || ||||||||| || || || | | |||| || || ||||| || || || | Sbjct 332943 GCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGA 332884 Query 77413 ATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTAT 77472 ||| | ||||| || ||| || || | ||||| | | | ||| | | | Sbjct 332883 GAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACT 332824 Query 77473 CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAG 77532 | | || | | | | || || ||||| | || |||| ||||| || | | Sbjct 332823 CGTATGGCATACGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATG 332764 Query 77533 GTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAA 77592 | | |||||| ||| || ||||| |||| || || |||||| || ||| || | Sbjct 332763 GACGATGTCTTAAATTCGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATCA 332704 Query 77593 TTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA-- 77650 |||||| | ||| || || || || || || |||| ||| ||||||||| Sbjct 332703 ATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACG 332644 Query 77651 TCTTCC-ATCTATAACAAACATGTTCA-AAG--CTATAGATGCTAGATTACAAACTGCTA 77706 |||| || | || ||| | || ||| | ||||| || ||||||||||| || | Sbjct 332643 TCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAA 332584 Query 77707 CCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGC 77766 | || | | | | |||| ||| || || || |||| ||||| | ||||| | Sbjct 332583 CTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTC 332524 Query 77767 CCAGATTTTGTTGGTTGCTCTTTTTATT-GCATGAGTCCTTATAAAGAATAAACGGAGTC 77825 ||| ||||| ||||| || || |||| ||| | || |||||| |||||| || ||| Sbjct 332523 CCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCA-TCTTTATAACAAATAAATGGTGTC 332465 Query 77826 CCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGAT 77885 || || ||||| || | | | || | ||| | | ||| || || |||| | | Sbjct 332464 CCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCTT-TCATCGTT 332408 Query 77886 TTGTATC----GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCA 77941 || || |||| | | | ||||| | ||||||| | ||| ||||| ||||| Sbjct 332407 TTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCA 332349 Query 77942 AACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT 78001 |||||| | |||||| |||||||| ||||||||| | | ||| || ||| | || Sbjct 332348 AACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTC 332289 Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 ||||| || ||| || |||||||| | ||| || ||| ||| ||||| || ||| Sbjct 332288 AACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCAT 332229 Query 78062 TTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 78121 ||||| ||||| |||||| ||| || | |||||| | || |||| |||||||| Sbjct 332228 CTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGG 332169 Query 78122 TTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGC 78181 ||| | ||| ||||| || | || || || || || ||||| ||||| || || Sbjct 332168 TTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGC 332109 Query 78182 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGA 78241 |||| ||||||||| | || ||| ||||| | || |||||| | ||||||||||| Sbjct 332108 AGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCG 332049 Query 78242 AATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTT 78301 |||||| ||| || | | ||||||||| | | | ||| | || ||||| |||| Sbjct 332048 AATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTT 331989 Query 78302 AGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT 78361 | || ||||| | | ||| || ||||||| | ||| || || || Sbjct 331988 ACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAAT 331929 Query 78362 GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGG 78421 | || | |||||| ||||||||| | | || |||| |||||| | ||| || Sbjct 331928 CCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGG 331869 Query 78422 AGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTAT 78481 | |||||| ||||| |||||| || | | | |||||||||| || | ||| || Sbjct 331868 TGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAAT 331809 Query 78482 GTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGT 78541 || | |||||| || | || ||||||| | ||| || |||||||| || Sbjct 331808 ATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAAC 331749 Query 78542 CTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 78600 || || | ||||| || ||| || ||| |||| | |||||| || ||||||| | | Sbjct 331748 TTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCAT 331690 Query 78601 ATGAAAAGTCT 78611 || ||| ||| Sbjct 331689 ATTCAAAATCT 331679 Score = 206 bits (228), Expect = 4e-48 Identities = 586/885 (66%), Gaps = 29/885 (3%) Strand=Plus/Plus Query 47826 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAA 47882 || |||||| ||| |||||||| ||||||||||||| || | || ||||| || Sbjct 54426 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 54485 Query 47883 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAA 47942 |||||||| |||| | ||| ||| ||||| ||||||| |||||| | || || Sbjct 54486 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 54545 Query 47943 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTT 48001 |||||| || |||| || | ||| | |||||| ||||| ||||| |||||| Sbjct 54546 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 54604 Query 48002 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTG 48061 ||| | | | ||||| || ||||| | ||| || |||| || |||||| | | Sbjct 54605 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 54664 Query 48062 TTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTC--ACTTGGTGGATAC 48119 ||| | ||||| || ||| || |||| || || | |||| | Sbjct 54665 TTCAACTTCAACAGCTTCTGATATGATT--TGTT---GTACTCTAGGAGCTGGTAATTTA 54719 Query 48120 AACAAATG---TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTA 48176 || | | |||| | |||||||| ||||| ||| ||| ||||||||||| | |||| Sbjct 54720 AATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTA 54779 Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236 || | ||| |||||||||||||| || ||||| |||||||||||||| |||||||| ||| Sbjct 54780 ATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATT 54839 Query 48237 GCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | | | |||| | |||||||| | || ||||| || || ||| | ||| ||| || Sbjct 54840 G-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTC 54898 Query 48296 TCCGTAACTGGCTTCGTTGTGTATCCA-CCGTT---GTGCCCAATCAGCCTTCTTCTTTA 48351 | || ||||| | || || || || |||||| || || ||||| || | Sbjct 54899 AGCAAAA----GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAA 54954 Query 48352 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGT 48411 || || || || | |||||| | | ||| || |||| ||| | Sbjct 54955 CAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATAT 55014 Query 48412 AAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 | |||| || | || || ||| |||| || || | |||||| | ||| ||||| Sbjct 55015 ATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAA 55072 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 | ||| | ||| ||||||| || |||| || || || | | || || || Sbjct 55073 AGCATAATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTT 55132 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 || | || || |||||||| |||||||| |||||||| || | ||| ||||||| | | Sbjct 55133 TTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCT 55192 Query 48590 TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 48649 ||| | | || | | ||| || | |||||| || ||| | ||||||| Sbjct 55193 TTCAGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGT 55252 Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 |||||||||||| || |||||||||||||| ||| ||||| Sbjct 55253 AACCCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 55297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668687116320