Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001945495.1_202017-01- 11] 13 sequences; 9,040,288 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 279 7e-70 >seq4 Length=1181719 Score = 279 bits (308), Expect = 7e-70 Identities = 1170/1824 (64%), Gaps = 46/1824 (3%) Strand=Plus/Minus Query 75415 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTT 75474 ||| || || || ||||||||||| |||| || || |||||||| || || || Sbjct 333482 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 333423 Query 75475 GGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 75534 | | | | | || | ||||| || |||| || || |||| | | | || Sbjct 333422 TGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACC 333363 Query 75535 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAAC 75594 ||||| || ||||| | || | |||||||| |||||||| | ||| || ||| Sbjct 333362 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAG 333303 Query 75595 TTGTTTGATATCATCTGGAAGATT---TGTATTTTGAATGGATCCGCCATCAGATATAAT 75651 | ||||| || |||| | | |||||||||| | ||||| | | ||| Sbjct 333302 CTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATA---CTGCCATTATTTGCAAT 333246 Query 75652 TGTATTCT---TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 75708 |||||| | | | ||||| ||| || ||| |||| | | || | || Sbjct 333245 AATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTG 333186 Query 75709 AGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATA 75768 ||||| || | || || ||||| | ||| || ||| ||||| || ||| | Sbjct 333185 CGGATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAA 333126 Query 75769 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828 ||| || | | |||||||| || |||||||| | ||| || || || ||||| || | Sbjct 333125 TGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGA 333066 Query 75829 CACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATC 75888 | ||||| | ||| | | ||||| | | || ||||||| || | | |||||| Sbjct 333065 TATCAATAGAGAATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATC 333006 Query 75889 CCAAAGATCTGA---TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGC 75945 ||||| | || |||| ||| |||| | ||| |||||| ||| || || || || Sbjct 333005 ACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGC 332946 Query 75946 ATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTC 76005 | || || |||||||||||| | || | ||||| || || || || || || || Sbjct 332945 AGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATC 332886 Query 76006 TAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT-GCGCTTCAAGA 76063 | || | ||||| || ||| || || | ||||| || |||| || | ||| Sbjct 332885 GAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGA 332826 Query 76064 CTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCA 76123 || | | || | | | | || || ||||| || || |||| ||||| || Sbjct 332825 CT--CGTATGGCATACGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCC 332768 Query 76124 ATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCT 76183 | || | |||||| ||| || ||| | |||| || || ||||| || || Sbjct 332767 AATGGACGATGTCTTAAATTCGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCA 332708 Query 76184 ATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA 76243 || | |||||| | ||| || || || || || || |||| || ||||||| Sbjct 332707 ATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCA 332648 Query 76244 AA-----TTTTCCATCTATCA-CAAACATATTAAGAGCTATAGATGCTAGATTACAAACG 76297 || | || | ||||| | ||| | ||| | ||||| || |||||||||||| Sbjct 332647 AACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACG 332588 Query 76298 GCTACCTCAT--TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGA 76355 || || || | | || | | |||| ||| || || ||||||| ||||| | | Sbjct 332587 GCAACTTCGTCCTTGC--TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAA 332530 Query 76356 TAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG-AG--TCCTTATAAAGAACAA 76412 ||||||| | ||||| ||||| || |||| || || || || |||||| || || Sbjct 332529 TAGTTCCCAAATTTTTCTGGTTACT---TTTGCTATTTGCAGCATCTTTATAACAAATAA 332473 Query 76413 ACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA 76472 | || || || || ||||| || | | | || | ||| | | ||| || || Sbjct 332472 ATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCTT- 332416 Query 76473 TTATAGATTTGTATC----GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCA 76528 | || | ||| || || | | | | ||||| | | ||||| | | ||| ||| Sbjct 332415 TCATCGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCA 332357 Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588 || ||||||||||| | ||| || ||||||| || ||||| | | ||| || | Sbjct 332356 TCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGA 332297 Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 76648 || | || ||| | || ||| || |||||||| | ||| || ||| ||| ||||| || Sbjct 332296 TCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGA 332237 Query 76649 GTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708 ||| ||||| ||||| |||||| ||| || | ||||| | || |||| Sbjct 332236 CATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACG 332177 Query 76709 TGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATA 76768 ||||||||||| | ||| || || || |||| || || || || ||||| ||| Sbjct 332176 TGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATA 332117 Query 76769 TATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTT 76828 || || ||||||| ||||||||| | || ||| ||||| | || |||||| | |||||| Sbjct 332116 TACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTT 332057 Query 76829 GTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCT 76888 ||||| |||||| ||| | | | ||||||||| | | | || | || ||| Sbjct 332056 GTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCT 331997 Query 76889 GCCATTTTA--GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTAT 76946 || | ||| | || | ||| ||| | ||||||| |||| || | ||| || Sbjct 331996 GCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGAAT 331939 Query 76947 CATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 77006 | || || | || | |||||| ||||||||| | | || |||| ||||| Sbjct 331938 CTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAA 331879 Query 77007 ACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAA 77066 | | ||| || | ||||||||| || |||||| || | | | |||||||||| Sbjct 331878 AGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTG 331819 Query 77067 CTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTC 77126 | ||||| ||||| | |||||| || || || ||||||| | ||| || |||| Sbjct 331818 CAGCTTCAATATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTC 331759 Query 77127 GTTCTACAGTCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCA 77185 ||| ||| || || | ||||| || ||| || ||| |||| | |||||| || || Sbjct 331758 TTTCCACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCA 331700 Query 77186 AAATAGTTGTATGAAAAGTCTCTT 77209 ||||| | ||| ||| ||| || Sbjct 331699 AAATAATCATATTCAAAATCTTTT 331676 Score = 223 bits (246), Expect = 5e-53 Identities = 588/883 (67%), Gaps = 25/883 (3%) Strand=Plus/Plus Query 46315 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAA 46371 || ||||| |||| |||||||| |||| |||||||| || | || ||||| || Sbjct 54426 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 54485 Query 46372 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAA 46431 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| ||| || || Sbjct 54486 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 54545 Query 46432 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTT 46490 |||||| || |||| || | ||| | |||||| ||||| ||||| ||||| Sbjct 54546 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 54604 Query 46491 CATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTG 46550 ||| | | | ||||| || || || | || || |||| || |||||| | | Sbjct 54605 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 54664 Query 46551 TTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCA- 46609 ||||| ||||| || ||||| || | |||| | | |||| | | Sbjct 54665 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCTAGGAGC---TGGTAATTTAAA 54721 Query 46610 -TCAAATG-TTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667 | || | |||| | |||||||| ||||| ||| ||| || |||||||| | |||||| Sbjct 54722 TTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAAT 54781 Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 | ||| |||||||||||||| |||||||| |||||||| ||||| |||||||| || | Sbjct 54782 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG- 54840 Query 46728 CGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | | |||| | |||||||| | || ||||| ||||| |||| | | || ||| || Sbjct 54841 CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 54900 Query 46787 CGTAACTGGCATCATTATGAATCCA-CCTTTGA---GCCCAATCAGCCTTTTTCTTTACA 46842 | || ||| || |||| || || || | ||||| || || || || || ||| Sbjct 54901 CAAAA----GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACA 54956 Query 46843 CAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATAT 46902 || || || | |||||| | | ||| | | |||| ||| |||| Sbjct 54957 GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATATAT 55016 Query 46903 GTATCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATC 46960 |||| || | || || ||| |||| ||| || | |||||||| ||| ||||| Sbjct 55017 CTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAG 55074 Query 46961 CGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCT 47020 | ||| | ||| ||||| | || |||| ||| || || | | | || || | Sbjct 55075 CATAATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTT 55134 Query 47021 CATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTT 47080 | | || || |||||||| |||||||| ||||| || || | ||| ||||||| | ||| Sbjct 55135 CCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTT 55194 Query 47081 CATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 47140 || | | || | | ||| || | |||||| || ||| | ||||||| Sbjct 55195 CAGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAA 55254 Query 47141 TCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATC 47183 ||| ||||| || || |||||||||||||| ||| ||||| Sbjct 55255 CCCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 55297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934284148160