Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq10 105 7e-18 >seq10 Length=1316356 Score = 105 bits (116), Expect = 7e-18 Identities = 268/398 (67%), Gaps = 20/398 (5%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| | |||||||| ||||||||||| || | || || ||| | Sbjct 168222 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 168281 Query 16734 CCATGAAATCAAAAGGATTAGTA--GCTGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 |||| ||||||||||||||| | | || | || |||| || || || || | | Sbjct 168282 CCATCCAATCAAAAGGATTAGAAACGTTGTAGAT-TTTTGGAATATCCAAG-GCAAAAAG 168339 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 ||||||||| || |||||||| ||||||||| ||| | | ||||||| || ||||| Sbjct 168340 TAATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAG 168399 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGC--TCTATAACAACCGCTTCCTTAATA 16909 | || ||||||| || |||| | ||| | || | |||| ||||| | ||| Sbjct 168400 ATCAACAGGAAGAGAGTC--ACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGATA 168455 Query 16910 ATACTAGCAACTCGTTC-CTCGGA-CGG----TGTATGTTTAAGATGTTTAAACATCAGA 16963 | | | | || | || ||| | | | || |||||| |||| | || | | Sbjct 168456 TGATTTG----TTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAA 168511 Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || || || || ||| | || || || | || |||||||| ||||||||||| | Sbjct 168512 CAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGT 168571 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGC 17061 || ||||| ||| ||||| || | |||||| || || Sbjct 168572 CCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGC 168609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545522368160