Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5 129 9e-25 seq11 122 1e-22 >seq5 Length=1067107 Score = 129 bits (142), Expect = 9e-25 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||||||||| || || || |||||||| || ||||| || || ||||| | Sbjct 562838 TTCCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAG 562779 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | |||||||| | ||| |||||||||||||| ||||| ||||| | ||| ||||| || | Sbjct 562778 AGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTG 562719 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | |||||||| ||||| || ||||||||| ||| | Sbjct 562718 GGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAA 562659 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| | ||||| || || ||||| || || |||| ||| || ||||| Sbjct 562658 CTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 562610 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||||||||| || || || |||||||| || ||||| || || ||||| || Sbjct 562380 CCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 562321 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| |||||||||||||| ||||| ||||| | ||| ||||| || || Sbjct 562320 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 562261 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 562260 ATTCCTTCCTTATCCTG 562244 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || || ||||| |||||||||||||| ||||| || || || || || Sbjct 562608 CCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 562549 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| |||||||||||||| ||||| ||||| | ||| ||||| || || Sbjct 562548 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 562489 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || |||||||| Sbjct 562488 ATTCCCTCCTTATCTTG 562472 >seq11 Length=1268624 Score = 122 bits (134), Expect = 1e-22 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||||||||| ||||| ||||| ||||| || || || ||||| || || || Sbjct 544490 CCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 544549 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || ||||| ||||||||||| |||| | || ||||| |||||| Sbjct 544550 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 544609 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || || ||||| || |||||| ||| ||| ||| Sbjct 544610 ATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACT 544669 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT 146283 || | |||||| || || |||||||| ||||| | || |||||||| || || Sbjct 544670 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTTCTT 544722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526288471040