Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11 100 3e-16 seq5 93.3 4e-14 >seq11 Length=1268624 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| || || ||| | ||||| || || ||||| | || |||||||| Sbjct 544719 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 544660 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | | || | || || || || || ||| ||||| ||| | || || || Sbjct 544659 TCCGATACTATTGAGAATGTAAAGGCAAAG-ATCCAGGATAAGGAGGGCATTCCTCCTGA 544601 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || |||||||| || || ||||| || || |||||||| || ||| | || || Sbjct 544600 TCAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTA 544541 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || ||| | ||| | ||| | ||||| || |||||| Sbjct 544540 CAATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAGACTTAGAGGCGGT 544489 >seq5 Length=1067107 Score = 93.3 bits (102), Expect = 4e-14 Identities = 167/240 (70%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 31184 GAAT-CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGT 31242 |||| |||| ||||| ||||| || |||||| ||||||| || || ||||| | || || Sbjct 562144 GAATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGT 562203 Query 31243 TGAACCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGC 31301 |||||| || || | | || | || || || ||| | ||| |||||||| | | Sbjct 562204 TGAACCTTCAGATACAATTGAGAATGTTAAGGCAAAGATTCA-GGATAAGGAAGGAATCC 562262 Query 31302 CGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGA 31361 | || || || || ||| | || || || || ||||| || || || || ||| | Sbjct 562263 CACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCT 562322 Query 31362 GCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| |||||||||||||| || ||| | || | || | ||||| || || |||| Sbjct 562323 CTGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGTGGTA 562382 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| ||||||| || || ||||| | || |||||||| || Sbjct 562610 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 562669 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| | ||| |||||||| | || || || || Sbjct 562670 GATACAATTGAGAATGTTAAGGCAAAGATTCA-GGATAAGGAAGGAATCCCACCTGATCA 562728 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || || || || ||||| || || || || ||| | ||||| || Sbjct 562729 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 562788 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||||| || ||| | || | || | ||||| || ||||| Sbjct 562789 CATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGCGG 562836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766333135040