Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10 307 1e-78 >seq10 Length=1316356 Score = 307 bits (340), Expect = 1e-78 Identities = 1198/1860 (64%), Gaps = 46/1860 (2%) Strand=Plus/Minus Query 61994 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 62052 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 447587 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 447529 Query 62053 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62112 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 447528 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 447469 Query 62113 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62172 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 447468 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 447409 Query 62173 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62231 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 447408 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 447350 Query 62232 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 62288 | || | |||| ||||| ||| || ||| ||||| | | ||| | | |||| Sbjct 447349 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 447290 Query 62289 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 62348 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 447289 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 447230 Query 62349 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT 62408 ||||| | ||| || ||| ||||| || ||| | || || | |||||| || Sbjct 447229 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 447170 Query 62409 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62468 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 447169 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 447110 Query 62469 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTACA 62525 || ||| | || ||||||| || | ||||||| ||||| | || ||| | Sbjct 447109 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 447050 Query 62526 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62585 || ||||| |||||| ||||| || ||| || |||||| ||| Sbjct 447049 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 446990 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 ||||| || | || || || || ||||| || || || | || | ||||| || | Sbjct 446989 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 446930 Query 62646 TCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTAAG 62702 || ||||| | ||||||| | | ||| | ||| | || |||| ||| ||| Sbjct 446929 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTATGGCATA--CGAAG 446874 Query 62703 -AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62761 | || || ||| || | ||||||| ||||| || | || | |||||| ||| Sbjct 446873 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 446814 Query 62762 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62821 ||| ||| | |||| || || |||||| || || || | |||||| | ||| || Sbjct 446813 CGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 446754 Query 62822 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT----- 62876 ||| || || || || || | || ||||||||| || | |||| Sbjct 446753 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTAT 446695 Query 62877 --ACAAACATGTTCAAGG-CAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 62931 || ||| | | |||| ||| ||| ||||||||||||||||| || || | | || Sbjct 446694 CAACGAAC-TTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC-- 446638 Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991 | |||| ||| || || ||||| | ||||| | |||||||| ||||||| | Sbjct 446637 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 446578 Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051 | ||||| || | || ||||| |||||| ||| ||||| || || || ||||| | Sbjct 446577 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 446518 Query 63052 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTT 63111 ||| | || || ||| | | || ||| | || | ||| || | Sbjct 446517 GAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTT--TCATCGTTTTCCTTCCACGGC 446461 Query 63112 C-TCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63168 | | |||| ||| | | ||| | | || || || |||||||||| | ||||| Sbjct 446460 CTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATC 446401 Query 63169 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCA 63225 | |||||||| || ||||| | | ||| ||| | ||||||| |||| || || Sbjct 446400 CCCTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCA 446344 Query 63226 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 63285 | || |||||||||| |||||| || ||| ||||| | ||| || || |||| Sbjct 446343 TGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTC 446284 Query 63286 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63345 | |||||| ||| || | ||| | | || |||| ||||| |||||||| || | Sbjct 446283 CATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAA 446224 Query 63346 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63405 | || || | || || || ||| || ||||| || || ||||| |||| ||||| Sbjct 446223 TTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTAT 446164 Query 63406 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTC 63465 |||| | || ||| ||||| | || || ||| | ||||| || || ||||| | Sbjct 446163 AAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAAC 446104 Query 63466 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 || | | | ||||||||| | || | || | || ||||| | ||| || || Sbjct 446103 CAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTG 446044 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 ||||| ||| |||||| ||||||| | ||| ||| || || | |||| || Sbjct 446043 CGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAA 445984 Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645 |||| |||||||| | || || || | |||||| | || || | || || | Sbjct 445983 AACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAG 445924 Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63705 |||| |||||| || | | | || || |||| || | || ||||| | || Sbjct 445923 TAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAAT 445864 Query 63706 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63765 |||| || | || ||||| | | || || |||||||| || | ||||||| | Sbjct 445863 GAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAA 445804 Query 63766 TTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63824 |||| || ||| |||||| |||| | |||||| || ||||||| | ||| ||| ||| Sbjct 445803 TTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATCT 445745 Score = 208 bits (230), Expect = 9e-49 Identities = 586/883 (66%), Gaps = 49/883 (6%) Strand=Plus/Plus Query 32989 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 33045 || |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 168194 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 168253 Query 33046 TTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 33105 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 168254 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 168313 Query 33106 AtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTC 33165 |||||| || |||| || ||| |||||||| || || ||||| |||||| | Sbjct 168314 ATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCC 168373 Query 33166 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGT 33225 || | | | ||||| || ||||| | ||| ||||||| || |||||| | | | Sbjct 168374 ATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTT 168433 Query 33226 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT 33285 |||| || || |||| ||| ||| | || | | || || | | ||| Sbjct 168434 TCAACTTCAACAGCTTCTGATAT----GATTTG-----TTGTACTCTAGGAGCTGGTAAT 168484 Query 33286 --AAATGT-------TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCT 33335 |||| | ||| | || ||||| || || || ||| || ||||| || || | Sbjct 168485 TTAAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACG 168543 Query 33336 ACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAA 33395 |||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| Sbjct 168544 ACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAA 168603 Query 33396 TATGGAAGCGAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC 33454 || | | | || | | |||||||| | |||||||| || ||| || |||||| || Sbjct 168604 AATTGCA-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTC 168662 Query 33455 TCTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTT 33511 | || || || | | || || ||||| || ||||| || || ||||||| Sbjct 168663 TTTCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTT 168719 Query 33512 TTACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCT 33567 | ||| || || | || || | |||||| | ||| ||| |||| Sbjct 168720 TAACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCA 168775 Query 33568 TTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 33625 ||| ||| |||| || | || || ||| |||| ||| || | |||||| | || Sbjct 168776 GTAATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACA 168833 Query 33626 TCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 | ||||| | || | ||| ||| || || | || |||| |||| || || | | Sbjct 168834 TTTGAAAAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACT 168892 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 || || ||||| | || || || ||||| || ||||| || || || || | ||| ||| Sbjct 168893 GCTAAGTTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATA 168952 Query 33745 AAATATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCTA 33802 |||| | |||| ||| || || | | |||||| | |||||| | || ||| | Sbjct 168953 AAATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAA 169010 Query 33803 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 ||||| |||||||||||| || || ||||||||||| Sbjct 169011 TCTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 169053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947106557920