Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq10 253 5e-62 seq3 102 2e-16 >seq10 Length=1316356 Score = 253 bits (280), Expect = 5e-62 Identities = 549/799 (69%), Gaps = 33/799 (4%) Strand=Plus/Minus Query 22168 GATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTT 22227 |||||| || |||| ||| ||| ||||||||||||||| | ||||||||||| Sbjct 168987 GATTGGGAAAGTCTTAAAGACCCTGAAAGACATTTTATCAAATACGTCTTAGCATTCTTT 168928 Query 22228 GCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCT-GAAATTCA 22286 ||| | || || || ||| | || || ||| | ||| ||| | | ||||| || Sbjct 168927 GCTGCAAGTGATGGCATTGTTATGGAAAACTTAGC-AGTAAATTTCCTTAGAGAAATACA 168869 Query 22287 ATACCCAGAGGCCAGA-TGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGG 22345 | ||||| |||||| ||| | |||| | | |||||| |||||| | | || | Sbjct 168868 AATACCAGAAGCCAGAATGTAT-TATGCTTTTCAAATGTCTATTGAACAAATACATAGTG 168810 Query 22346 AAACATATTC------TAT-GAT-GCTACAGTCACTCGTAGAAGATAAAGACGAACAACG 22397 |||| ||||| ||| ||| | || | | ||| || |||||| || | Sbjct 168809 AAACTTATTCATTACTTATTGATAGATATATT-ACTGATAT----TAAAGA---ACGTCA 168758 Query 22398 AAACTTATTCCGCGCGATT-CGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGC 22456 || | || || ||| | || ||| || | |||| || || ||||| ||||| Sbjct 168757 AATGCTCTTTGAAGCAATTTCTCAT-ATTGAAGCTGTTAAAAAGAAAGCAGAATGGGCAA 168699 Query 22457 TGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTG--GT 22514 ||||||||||| |||||| || || || ||| | |||||| ||| ||||| || Sbjct 168698 CTAAATGGATGAATTCTGAACGATCTTTTGCTGAAAGAATTATTGGATT--CTGTGCTGT 168641 Query 22515 TGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAA 22573 |||||| ||| | |||||||| ||| ||||||||||| |||||||| |||||||||| | Sbjct 168640 TGAAGGAATTCTATTTTCTGGTAGC-TTTTGTGCAATTTTTTGGCTTAAAAAACGTGGAC 168582 Query 22574 TTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCG 22633 ||||||| || || || ||||| ||||| | ||||| || ||||| ||||| ||| | | Sbjct 168581 TTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGTCTCCATGCTG 168522 Query 22634 ATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTAC 22693 | ||||| ||| | ||||| || | | | | |||| | ||| | | |||| Sbjct 168521 ACTTTGCTTGTTTAATATAT--AAAGCCCTTAAAT-TTAAATTACCAGCTCCTAGAGTAC 168465 Query 22694 TTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAG 22753 | || || || | || |||||| ||||| | ||| |||| || | | || | Sbjct 168464 AACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGACTCTCTTCCTG 168405 Query 22754 TAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATC 22813 | ||| |||||||| || | | ||| ||||||| |||||||||| ||| Sbjct 168404 TTGATCTTATTGGTATGAACTCAAGACTTATGGCCCAATATATTGAATTTGTTGCTGATA 168345 Query 22814 GTCTATTAATTTCACTCGGTTATGCAAAGCAT-TATAACGTCGTTAATCCATTTGAATGG 22872 | || | ||| || || ||| | || || || ||||| |||||| ||||| ||| Sbjct 168344 GATTACT-TTTTGCCTTGGATATTCCAAAAATCTACAACGTTTCTAATCCTTTTGATTGG 168286 Query 22873 ATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATAC 22932 ||||| |||||||||||| |||| || || || ||||||||||| |||||||||||||| Sbjct 168285 ATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAAAGAGAGTTGGTGAATAT 168226 Query 22933 CAAAAAGCAGGTGTTATGG 22951 |||| || || ||||||| Sbjct 168225 CAAATGGCTGGAGTTATGG 168207 >seq3 Length=1102581 Score = 102 bits (112), Expect = 2e-16 Identities = 180/261 (69%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 145532 TAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTC 145591 |||| |||||| |||||||| ||||| ||| |||||| ||| | || ||||| || Sbjct 951311 TAAAATTTCATCAGAAAATCCTGTTCCTGCCTTACATACAGTTTCATATACCTCTTCCTC 951252 Query 145592 TGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGT 145651 || || || || || | || | | ||| | || ||| | | ||| || || Sbjct 951251 TGTATTGTAAACAGCTAATAGAAAAGTTCCAAAAACCCCATTTCTTTTACCTTTTCC--- 951195 Query 145652 ATACC---CCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTT 145708 ||| | | ||||| || |||| |||| ||||||| | ||| | | |||||| || Sbjct 951194 ATAGCATGCTGCAATAGGAACAACATCAATACTATCAGTAAGTCCATCCACATAATCTTT 951135 Query 145709 TTTAAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAA 145768 |||| ||||| ||| || ||||| | ||| || ||||||||||| | ||||| | ||| Sbjct 951134 CTTAATTTTTAACCAGTTAAGAGATCTTTTTGAAGGTTCATAGCTTGCATTATCATGCAA 951075 Query 145769 TGATTTTACCATTAGCCCCTC 145789 | || ||||| || ||||| Sbjct 951074 AGTCTTAACCATGAGTCCCTC 951054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353399609384