Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2 253 2e-61 seq3 242 3e-58 seq4 170 2e-36 seq11 125 6e-23 seq5 122 7e-22 >seq2 Length=988320 Score = 253 bits (280), Expect = 2e-61 Identities = 581/865 (67%), Gaps = 25/865 (3%) Strand=Plus/Minus Query 551749 TATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTG 551808 || || | ||||||||| | ||| || |||||| ||| ||| |||| | |||| Sbjct 98675 TAACTATTGAAGATGGTATTTTTGAAGTTAAAGCTACCGCTGGTGATACTCACTTGGGTG 98616 Query 551809 GCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGAAGATTTTAAACGAAAAAACA 551868 | |||||||||||||| ||||| || || ||||| ||||||| || |||| || | Sbjct 98615 GTGAAGATTTTGATAACAGACTCGTGGAATTCTGTGTACAAGATTTCAAGAGAAAGAATA 98556 Query 551869 AAGTT---GATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAA 551925 || | ||| || || || ||| | |||| | | | || |||||| || || Sbjct 98555 GAGGTATGGATTTAACTTCAAATGCTAGAGCTTTAAGAAGACTCAGAACTCAATGTGAGC 98496 Query 551926 GAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTG 551985 | || || || || | |||||| ||||||| | || ||||| |||||||| | | || Sbjct 98495 GTGCAAAGAGAACTTTGTCATCTTCTACTCAAGCTACAATTGAGTTAGATTCACTCTATG 98436 Query 551986 AGGGAATTGATTATA-ATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGAT 552044 |||| ||||||||| | ||| || || |||| ||| ||||| | || ||||| Sbjct 98435 AGGGTATTGATTATTCAGTTGCC-ATCAGTAGAGCCAGATTCGAAGAACTCTGCGCTGAT 98377 Query 552045 CTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAA- 552103 ||| | ||| | | ||||| || |||| | | ||| | || || || Sbjct 98376 TACTTCCGTGCAACTTTAGCTCCAGTTGAGAAAGTACTCAAGGATGCTGGTATGGACAAG 98317 Query 552104 --ATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGC 552161 ||| |||||||| |||| | |||||||| |||||| | ||||| || ||| Sbjct 98316 AGATCT---GTACATGATGTTGTATTGGTTGGTGGTTCTACACGTATTCCAAAGGTTCAG 98260 Query 552162 GAAATG-TTAAGTTCTTATTTCAATGGTAAAAA---ATTAAATGAAAGTGTTAATCCAGA 552217 | || || || || ||| || |||||| | || || | || | |||||||| Sbjct 98259 GCCTTGATTCAGGAATTCTTT-AACGGTAAAGAGCCATGCAAAGCAA---TCAATCCAGA 98204 Query 552218 TGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA---CAAACTGA 552274 ||| |||||||| |||||||| || | ||||| ||||| | ||| ||| | Sbjct 98203 TGAAGCTGTTGCTTATGGTGCTGCTGTACAAGCTGCTATCTTAAATGGTGAGCAATCCTC 98144 Query 552275 TGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAAC 552334 || |||| || | || | | |||||| |||| |||| || ||||||||||| Sbjct 98143 TGCCG---TACAGGATCTCTTATTATTGGATGTTGCTCCATTATCACTCGGTTTAGAAAC 98087 Query 552335 AGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATC 552394 | ||| ||| ||||||| || ||||| || | ||||| ||||| || || || | Sbjct 98086 TGCTGGTGGTGTTATGACCAAGCTTATTGAACGTAATACAACTATCCCAGCAAAGAAGAC 98027 Query 552395 TCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGG 552454 | || || |||| ||| | ||||| || | | ||| || ||| ||| ||| || Sbjct 98026 ACAAGTCTTCACTACTTATGCTGATAACCAGAGCGGTGTCTTGATCCAAGTTTATGAGGG 97967 Query 552455 AGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCC 552514 || ||| | ||||| ||||| ||| ||||| | || || | || |||||||| Sbjct 97966 TGAGAGAGCCATGACTAAGGATAACCATCTCCTTGGAAAGTTCCATCTTGATGGTATTCC 97907 Query 552515 TCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAAT 552574 || || || | || ||||| ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 97906 ACCAGCACCAAGAGGTGTACCACAAATTGAAGTCACTTTTGATATTGATGCTAATGGTAT 97847 Query 552575 TTTGAATGTGACTGCTTGTGATAAA 552599 |||||||| ||||| ||||||| Sbjct 97846 CTTGAATGTATCTGCTGTTGATAAA 97822 Score = 232 bits (256), Expect = 5e-55 Identities = 386/553 (70%), Gaps = 11/553 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| ||||| |||||||| |||||||| ||||||||||| ||| ||| | || Sbjct 99292 AGCTATTGGTATTGATTTAGGTACCACATACTCATGTGTTGGTGTATGGAGAAACGATAC 99233 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || ||| || | || |||||||||||| | || || ||||| ||||| | || || Sbjct 99232 TGTAGATATTGTTCCAAACGATCAAGGTAACCGTACAACACCATCATATGTAGCATTTAC 99173 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 |||||||| | | | |||||||||||||||| |||||| || | ||||| || Sbjct 99172 TGAAACTGAGCGTCTTATTGGTGATGCAGCAAAGAATCAAGTTGCTAGAAATCCAGAAAA 99113 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || ||||||||||||||||| | ||||| |||| ||| ||||| | | || || Sbjct 99112 CACAGTTTTTGATGCTAAACGTCTTATTGGTAGAAAGTTTGATGATCAGGCAGTACAAAG 99053 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTC--TGGAAAACCTTAT----AT 550284 ||||||| || ||||| || || | |||| | | | ||| || | || | Sbjct 99052 TGATATGACTCACTGGCCATTTAAAGTAGTTAGAGGTCCAAAGGATAAGCCAATCATCAG 98993 Query 550285 TG-AAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGG 550343 || || ||||| | | || | || |||| | ||| ||||||| |||||| Sbjct 98992 TGTAAACTACTTAGG--TGAAAAG--AAGGAATTCCATGCTGAAGAAATTTCTGCTATGG 98937 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAG 550403 ||||| || ||||| ||| | || | | |||| || ||| | |||| | Sbjct 98936 TTTTACAAAAGATGAAGGAAATCTCTGAAGCATACTTGGGTCGCCAAATTAAGAATGCTG 98877 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 || | ||||| ||||| ||||| |||||||||||||||||||| || || ||||| || Sbjct 98876 TAGTTACTGTTCCAGCTTATTTCAATGACTCACAACGTCAAGCAACAAAGGATGCAGGTG 98817 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 |||||||| | ||||| | | || || || || || ||||| ||||| |||| | Sbjct 98816 CAATTGCTGGTTTGAATGTAATGAGAATCATTAACGAGCCAACTGCAGCTGCTATTGCTT 98757 Query 550524 ATGGACTTGATAA 550536 |||| |||||||| Sbjct 98756 ATGGTCTTGATAA 98744 Score = 91.5 bits (100), Expect = 1e-12 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 361701 CAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTC 361760 ||||||||||||| | | ||| || ||||| |||||||| ||| | || ||||| | | Sbjct 98748 CAAGACCATAAGCAATAGCAGCTGCAGTTGGCTCGTTAATGATTCTCATTACATTCAAAC 98807 Query 361761 CCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAA 361820 | || ||| |||||| || ||||||||||||| ||||| ||||| || |||| Sbjct 98808 CAGCAATTGCACCTGCATCCTTTGTTGCTTGACGTTGTGAGTCATTGAAATAAGCTGGAA 98867 Query 361821 CAGTAATCACTGCTTTTTCAACTTG 361845 |||||| || || || | || ||| Sbjct 98868 CAGTAACTACAGCATTCTTAATTTG 98892 >seq3 Length=1102581 Score = 242 bits (268), Expect = 3e-58 Identities = 480/700 (69%), Gaps = 33/700 (5%) Strand=Plus/Plus Query 368481 TGAAACATTTAGAGAAAAAATGTTAAATAATAATTCTAAAATAAATTGGATGCCATCTAA 368540 |||| | || | ||| ||| | |||| ||||||| |||| |||||||| ||| | | Sbjct 955890 TGAATCTTTAAAAGATAAATTATTAATTAATAATGAAAAAACTAATTGGATTCCAAATTA 955949 Query 368541 TATTGGAACAAAACATTTTGATAATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAG 368600 | || | |||| ||| |||||||| | ||| || | ||||||||| || | Sbjct 955950 TGTTAAAGAAAAAAGATTTCATAATTGGTTACAAGATGCTAGAGATTGGTGTGTTAGTCG 956009 Query 368601 AAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGT 368660 | | | ||||||||||| || || || ||||| ||| || ||| | | ||| Sbjct 956010 TAATCGTTTTTGGGGAACACCTATACCTATATGGGTATCAGAAGATTATACAATTATTAA 956069 Query 368661 TTGTATAGGTTCAATTAAAGAATTGCAAGAATTA---TCTGGTGTGCAAAAT------AT 368711 ||||| ||| ||| ||||||| || ||| || | | || || || Sbjct 956070 ATGTATTGGTAGTATTGAAGAATTAAAATCTTTAGCATCAAATTTAAAAGATGAAGAAAT 956129 Query 368712 TAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCC--ATCAAAGAAAGGAAAA 368769 || |||| ||||| | || |||||| | ||| ||||||| ||| |||| ||||| Sbjct 956130 TAATGATATACATCGTCATTTTATTGATTATATTGAAATTCCTGATCCAAGA--GGAAAT 956187 Query 368770 GGTTT------ATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCT 368823 || ||| || |||||| |||||| ||||| ||||||||||| |||||| Sbjct 956188 AATTATCCACCATTAAAAAGAATTGAAGAAGTTTTTGATTGTTGGTTTGAATCTGGTTCT 956247 Query 368824 ATGCCTTATGG-TCAAATACATTATCCATTTGATAACGCAAAATACTTTGATAATGATAA 368882 |||||||||| || | || ||||||||||||| || | ||| ||| ||||| Sbjct 956248 ATGCCTTATGCATCTATTA-ATTATCCATTTGAAAATCAAGAATTATTTAATAAT----- 956301 Query 368883 AGATTATGTGGCTGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATAC 368942 | ||| || | |||||||| ||| | ||||||||| | || ||||||||||| Sbjct 956302 ATATTTCCTG-CAGATTTTGTTGGTGAAGGTTTAGATCAAACAAGAGGATGGTTTTATAC 956360 Query 368943 CCTATTAGTATTATCCACAGCTATTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAAC 369002 || | |||||||| ||||| | || ||| |||| |||||||||||| | || || | Sbjct 956361 ATTAATGGTATTATCAACAGCATTATTTGATCAACCAGCTTTTAAAAATATTATTGTTAA 956420 Query 369003 TGGTATTGTTAATGCATCTGATGGTCAAAAGATGTCAAAAAG--TAAGGGTAATTATTCC 369060 |||| | ||| |||||||||||| |||| ||||||||||| ||| |||||| | Sbjct 956421 TGGTTTAGTTTTAGCATCTGATGGTAAAAAAATGTCAAAAAGATTAA--AAAATTATCCT 956478 Query 369061 GATCC-TAATATTTTAATTGATAAATTTGGTGCTGATACTTTGAGATTATACCTATTGTC 369119 ||||| | | || || || |||||| |||||| ||| |||| ||||||| || | Sbjct 956479 GATCCATTAGATATT-GTTAATAAATATGGTGCAGATTCTTTAAGATTATTTTTAATTAA 956537 Query 369120 ATCACCTGTAGTAAAAGCAGAATCTATTAAATTTGATGAA 369159 ||||| || || | ||||||| || | | |||| | ||| Sbjct 956538 TTCACCAGTTGTTAGAGCAGAAACTTTAAGATTTAAAGAA 956577 Score = 114 bits (126), Expect = 1e-19 Identities = 207/300 (69%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 || ||||| || ||||| | ||| | ||||| | || || || | ||| | || Sbjct 860322 GACGTTACACCCTTATCTTTAGGTATTGAAACTTTGGGTGGAGTTTTTACTCGATTAATT 860263 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 | |||||||| || || || |||||| | ||||| || || | |||| ||| Sbjct 860262 AACAGAAATACCACAATACCCACTAAAAAGAGCCAAGTATTCTCCACTGCTGCAGACAAT 860203 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 |||||| ||| |||| || |||| ||||||||||| |||| || |||||||| Sbjct 860202 CAAACTCAAGTTGGAATTAAAGTTTTCCAAGGAGAAAGAGAATTTGCTGCTGATAATAAG 860143 Query 552483 CAACTTGGT-ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAAT 552541 ||||| | ||| || | | || |||||||| || || | || || || ||||| Sbjct 860142 TTGCTTGGACAATTTGAAATGATG-GGAATTCCTCCAGCACCCAGAGGGGTTCCTCAAAT 860084 Query 552542 TGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||||| || || ||||| ||||| ||||||||| ||||||| ||| |||||| || Sbjct 860083 TGAAGTCACCTTTGATATTGATGCAAATGGAATTATGAATGTTGGTGCAATTGATAAGTC 860024 Score = 100 bits (110), Expect = 2e-15 Identities = 323/490 (66%), Gaps = 16/490 (3%) Strand=Plus/Plus Query 367267 GATGGACCTCCATTTGCCACAGG--TACAATGCATTATGGTCATATTTTAGTATCATCTA 367324 ||||||||||||||||| ||||| ||| | |||||||||||||| | | | || Sbjct 954751 GATGGACCTCCATTTGCTACAGGATTACCA--CATTATGGTCATATACTTGCAGGTACTG 954808 Query 367325 TTAAAGACACCATAATTAGATATTTTACCATGAAGGGTTACAAAGTTGATAGAAGAAATT 367384 ||||||| | | |||||| || || || || | ||| |||||| | Sbjct 954809 TTAAAGATGTAGTTACAAGATATGCAACTCAAAAAGGATATTATTGTGAAAGAAGATTTG 954868 Query 367385 CTTGGGATTGTCATGGAGTTCCAATTGAA-ATGTTA--GCTAAAAAAGTAATCGGATA-C 367440 |||||||| |||||| | ||| | ||| ||| | | |||| || ||| ||| | Sbjct 954869 GATGGGATTGCCATGGATTACCAGTAGAACATGAAATTGATAAACAATTAA----ATATC 954924 Query 367441 ACAACAAAGAAAGAATTATATGATTATGGAATTAATAATCATAATGATATTTGTCG-TAA 367499 |||| | |||| | | || | || || || | ||||||| ||| | | | Sbjct 954925 ACAAGTAGAGAAGATGTTTTAAATAAAGGTATAGATTTTTATAATGAATCATGTAGATCA 954984 Query 367500 TTTGGTTTTAAAATGTGCTGATCGCTGGTA-TCAAGATTTTGAACGTATTGGAAGATGGA 367558 ||| | |||| || | || | ||| | |||| | ||||| | ||||||||| | Sbjct 954985 ATTG-TATTAAGATATACTCAAGAATGGAAATCAAC-TGTTGAAAGAGTTGGAAGATTAA 955042 Query 367559 TTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTCATGGAATCTGTTATTTGGG 367618 |||| | | |||| |||||||| |||||| ||||||||| || |||| |||| Sbjct 955043 TTGATTTTGATAATGGTTATAAAACTATGGATTTAAATTTCATGCAAACTGTATGGTGGG 955102 Query 367619 CATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGTTATAAAGTAATGCCATATT 367678 |||||||||| | | || | | | ||| | || ||||| |||||||||||||| Sbjct 955103 TATTTAAACAACTTTTTGATCAGAATCTTGTTTATAGAGCTTATAGAGTAATGCCATATT 955162 Query 367679 CAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAACAAAATTATCGAGAAGTAG 367738 | || | ||| ||| | || || |||||||| || ||||||| ||| || Sbjct 955163 CTACAGCATGTGCTACACCATTATCTAATTTTGAATGTAATTTAAATTATAAAGATGTTA 955222 Query 367739 TTGATCCATC 367748 ||||||||| Sbjct 955223 ATGATCCATC 955232 >seq4 Length=1103974 Score = 170 bits (188), Expect = 2e-36 Identities = 344/505 (68%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 428100 AACCGGTTCCAATTCCTTCTGTACCATTTACAAGAATCATTGGAATGACTGGTGCATAAT 428159 |||| || |||||||| || ||||||||||| | |||||||||||| | ||| |||||| Sbjct 213957 AACCTGTACCAATTCCATCAGTACCATTTACCAAAATCATTGGAATTATTGGAACATAAT 213898 Query 428160 ATTGTGGTTCAATCATTTTATTATCTTCATATTGTAAATGTAAAATATCAAAATCATGCT 428219 || |||||||| || ||| |||||| || ||| | | | |||| || Sbjct 213897 ATAAAGGTTCAATTTGTTGTCCATCATCATATAAATAAGTTAATAAAGGATCATCAGCCT 213838 Query 428220 CGATAAATAtttttttAGCCAATTCATCAAGTTGTGTAAAGATATATCTTGCG---CTTG 428276 | || || | | ||| | ||| | || | ||||| ||||| | || |||| Sbjct 213837 CTGGGAAAATATATCTAGTCCATTTAGATAGCTTAGTAAATATATAACGAGCAGCACTTG 213778 Query 428277 CGGAATCTTTACCTCCTGACATTCTAGTTCCAAATTGTCCATTAGGCATCAATAAATTAA 428336 | |||||| || ||| ||||| | |||||||| ||| || || | ||| | Sbjct 213777 C---ATCTTTTCCACCTTCTTTTCTACTACCAAATTGACCACATGGTTCTAACAGATTTA 213721 Query 428337 TATTATTACTTCCCACATAATTTTGGGCCATATTAACAATGGTACTAGTTAAGGATTGTT 428396 |||||||||||| ||| ||||||| |||||||||||||| ||||| ||| ||| || Sbjct 213720 GATTATTACTTCCAACAAAATTTTGAGCCATATTAACAATAGTACTTTGTAATGATGATT 213661 Query 428397 CACCATGATGATATTTAGTTCTTTTTGAAACTGCACCTTGTAATTCTGATACCTTTATTT 428456 | ||||||||||| | | || | ||| ||| ||||| || | ||||| Sbjct 213660 CTCCATGATGATAAGCACTATGTTCAGCAACATAACCAGCTAATTGTG-CAACTTTA--A 213604 Query 428457 CTTCTTTATAAATACCTTCTTCTACTGATCCATAAAATACTTTGCGTTGTGATGGTTTGA 428516 ||| |||| || || || | || | || ||| |||||| | |||| ||||| | Sbjct 213603 GTTCATTATTAAGCTTTTTTTTAAATGTTGCAAAAAGTACTTTTCTTTGTCCAGGTTTTA 213544 Query 428517 ATCCATCCATAATATTAGGTATAGATCTTAAATTATC--ATCCACTGAGAATGATATTAG 428574 | ||||| | | ||| || |||||||| | |||| ||| ||| ||| ||| || Sbjct 213543 AACCATCTAATAAATTTGGAATAGATCTAGTAGTATCATATCTACT--AAATAATACAAG 213486 Query 428575 TTCTTGATGAATGAAATCATAATAT 428599 ||||| |||||| |||||| ||||| Sbjct 213485 TTCTTTATGAATAAAATCAAAATAT 213461 >seq11 Length=1268624 Score = 125 bits (138), Expect = 6e-23 Identities = 275/401 (69%), Gaps = 12/401 (3%) Strand=Plus/Plus Query 344255 TTTTATCTCCCACCATTTGTTTGAGACGTTGATAATATGTTGGACCAATGAATATTTTAA 344314 ||||||| | ||||| ||||| || | ||||| || ||||| ||||| || ||| | Sbjct 826813 TTTTATCGTCAACCATATGTTTTAGTCTCTGATAGTAAGTTGGCCCAATAAAGATTCTCG 826872 Query 344315 CTTCCATTCTTTGTCCCGTCATTCCATTATACATTGTTTCATTTCCCCATGCTTCATGT- 344373 |||| ||| | |||||| ||||| |||||| ||||||||| || ||| || Sbjct 826873 ACTCCAATCTCTTTCCCGTATGGCCATTGTACATTACTTCATTTCC--ATTTTTC-TGAA 826929 Query 344374 -CCTAAAGCTACTAAATCATCATTAATTTTATTAATAT-TAACTCCTGTAAATGGAGTTG 344431 || | ||| || | | | | | || | | ||| | ||||| ||||||| Sbjct 826930 ACCCGGAACTATGTAAACGGCTAGATATCTCTTCAACTGTAATTTTCGTAAAAGGAGTTG 826989 Query 344432 CATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATTCAATTAATTGAC 344491 |||| || | | |||| |||||| || |||| || |||| |||||||||||| || | Sbjct 826990 CATCGCCCTCCAATCCTTGAATTGCGCACGCTTTGCCAAGTAGACATTCAATTAAATGGC 827049 Query 344492 CTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAGGAATTAATCCTG 344551 | || |||||||| || ||| || |||||| |||||||| || |||| |||||| Sbjct 827050 CAATTGTCATACGCGAAGGAATAGCATGAGGATTCATAATAATGTCTGGAA-TAATCC-C 827107 Query 344552 ATTTTGTG--AATGGAAGATCTGCA-CGATGAATTTTAAATCCAACTGTTCCTTTTTGTC 344608 || ||||| ||||| | ||| || || || ||| | || | ||| || ||||| | Sbjct 827108 ATCTTGTGTAAATGGCATATCCTCAGTTCTGTATGTTATA-CCGATTGTACCCTTTTGGC 827166 Query 344609 CAGCTCTTGATGAGAATTTATCACCTACTGCTGGAATTCTT 344649 || ||| |||| || ||||| || || || |||||| Sbjct 827167 CATGTCTAGATGCAAACTTATCTCCAACATGAGGTATTCTT 827207 Score = 104 bits (114), Expect = 2e-16 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 |||||||| |||| ||||||||| |||||| | ||| ||||| ||||| || || | Sbjct 544535 ATATTGTAGTCAGATAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGC 544594 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 || |||||||||||||| || || ||||| || || ||| ||||| |||||| ||| Sbjct 544595 TGTTGATCAGGAGGAATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTA 544654 Query 563413 TCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 || | | | ||| | || | || || || || | |||||| || ||||||||| Sbjct 544655 TCGGAAGGTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGC 544714 Query 563473 AT 563474 || Sbjct 544715 AT 544716 >seq5 Length=1067107 Score = 122 bits (134), Expect = 7e-22 Identities = 151/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 563274 AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTT 563333 ||| | ||| | |||| ||| |||||||||| |||||||| ||| || | |||||| Sbjct 562808 AAGTGGACTCTTTTTG--AATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTT 562751 Query 563334 TCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTG 563393 ||| ||||| || | | ||| |||||||| || |||||||| ||||| ||||| ||| Sbjct 562750 TCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGC 562691 Query 563394 TTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAGTA 563451 || || |||||||||||| || || || ||| | ||| | ||| || || || Sbjct 562690 CTTAACATTCTCAATTGTATC--TGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTC 562633 Query 563452 AGAGTTTTAACGAAAATTTGCATA 563475 | ||| ||||||||||| |||||| Sbjct 562632 AAAGTCTTAACGAAAATCTGCATA 562609 Score = 122 bits (134), Expect = 7e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 930654 AAAGTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTG 930713 |||||| | | ||||| || ||||||||||||||||||||||||||| | ||||| || Sbjct 736852 AAAGTAATTGTAGATTTCTCATCACCAAATATTGCCAAAGAAATGCATGTGGGACACTTA 736793 Query 930714 CGTTCTACCATTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTT 930773 | ||||| || ||||| || | || |||| | |||||||| ||| | |||| Sbjct 736792 AGATCTACAATCATTGGTGATACAACATCTAGAATTCTTGAATATTTAGGATTTGAAGTA 736733 Query 930774 CATCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCTTATATA 930833 |||| |||||| |||| |||||||| || |||||||||||| | |||| ||| || Sbjct 736732 TTAAGAGTTAATCATGTTGGAGATTGGGGTACTCAATTTGGTATGCTTATTGAATATTTA 736673 Score = 116 bits (128), Expect = 3e-20 Identities = 150/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 563274 AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTT 563333 ||| | ||| | |||| ||| |||||||||| |||||||| ||| || | |||||| Sbjct 562352 AAGTGGACTCTTTTTG--AATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTT 562295 Query 563334 TCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTG 563393 ||| ||||| || | | ||| |||||||| || |||||||| ||||| ||||| ||| Sbjct 562294 TCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGC 562235 Query 563394 TTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAGTA 563451 || || |||||||||||| || || || ||| | ||| | ||| || || || Sbjct 562234 CTTAACATTCTCAATTGTATC--TGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTC 562177 Query 563452 AGAGTTTTAACGAAAATTTGCATA 563475 | ||| ||||| ||||| |||||| Sbjct 562176 AAAGTCTTAACAAAAATCTGCATA 562153 Score = 105 bits (116), Expect = 5e-17 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 563284 TCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAA 563343 ||||| ||| ||||| |||| |||||||| ||| || | ||||||||| ||||| Sbjct 562572 TCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAG 562513 Query 563344 ATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCC 563403 || | | ||| |||||||| || ||||| || ||||||||||| ||| || || | Sbjct 562512 ATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTC 562453 Query 563404 TCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAA 563461 ||||||||||| || || || ||| | ||| | ||| || || || | ||| || | Sbjct 562452 TCAATTGTATC--TGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGA 562395 Query 563462 CGAAAATTTGCATA 563475 | ||||| |||||| Sbjct 562394 CAAAAATCTGCATA 562381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295365385880