Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq11 141 7e-29 seq5 122 7e-23 >seq11 Length=1268624 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || || | ||| || ||||| | ||| ||| || || |||||||| |||||| Sbjct 544490 CCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 544549 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | | || ||||| ||||| || ||||| ||||| ||||||||||| | ||| Sbjct 544550 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 544609 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || |||||| |||||| | | || || || | || || Sbjct 544610 ATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACT 544669 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || ||||| || |||||||| |||||||| |||||| Sbjct 544670 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATC 544717 >seq5 Length=1067107 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||| || ||||||| || |||||||||||| ||||| ||||| Sbjct 562608 CCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 562549 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | | || || || || || || ||||| |||| || |||||||| | || Sbjct 562548 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 562489 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||| || ||||||| || ||| | | | ||||| | || || Sbjct 562488 ATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACT 562429 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| |||||||| || |||||||||||||| Sbjct 562428 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 562382 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | ||| || || |||| ||| |||||||||||| ||||||||||| Sbjct 562380 CCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 562321 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | | || || || || || || ||||| |||| || |||||||| | || Sbjct 562320 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 562261 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||||| || ||| | | | ||||| | || || Sbjct 562260 ATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACT 562201 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| |||||||| || |||||||||||||| Sbjct 562200 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 562154 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || || | ||| || || |||| ||| |||||||||||| ||||||||||| Sbjct 562836 CCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 562777 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | | || || || || || || ||||| |||| || |||||||| | || Sbjct 562776 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 562717 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||||| || ||| | | | ||||| | || || Sbjct 562716 ATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACT 562657 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| |||||||| || || ||||||||||| Sbjct 562656 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 562610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937544287876