Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10 150 2e-31 >seq10 Length=1316356 Score = 150 bits (166), Expect = 2e-31 Identities = 1053/1652 (64%), Gaps = 62/1652 (4%) Strand=Plus/Plus Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTT 75369 ||| |||||||| || ||||| ||| | || || || |||| || ||||| ||| || Sbjct 445925 TCATGCAACACCCACACTCTTTAATTCAGGCACGCCGCGACCTCAAATGTCATCTTGTTT 445984 Query 75370 CCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGC 75429 | || | || || ||||| |||||||||| || || || || | || | Sbjct 445985 TTTACTCAGGATTCCAGAAGATTCAATAAACGGTATCTTTGACACACTAACTAAATG--C 446042 Query 75430 GCAAATCTCA--AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 ||||| | | ||| || || || ||||| || | | || | |||| | | Sbjct 446043 GCAAACATTAGTAAGACTGCAGGTGGCCTTGGGGTGGCAGTAAGTAATATTAGAGGAACT 446102 Query 75488 AAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 75547 || |||||| || |||||||| ||| |||| | ||||| ||||| ||||| Sbjct 446103 GGTTCATATATTCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTT 446162 Query 75548 TTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCG 75604 | ||| | ||| || | ||| | |||||| || | || || || |||| || Sbjct 446163 TATAATGACACTGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCA 446222 Query 75605 GTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTG-AGTTACGACTCAACCA 75663 | || |||||||||||||| | ||| | | ||||| ||| | ||| || || || Sbjct 446223 ATTTATTTGGAACCATGGCACGTTGATGTTGTAGAGTTTATTGAAATTAGGA-AGAATCA 446281 Query 75664 AGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTT 75723 || | |||||| | ||| | ||||||||| | |||| ||| |||| || || || Sbjct 446282 TGGAAAGGAAGAGATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTT 446341 Query 75724 CATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGA-CAAGGCACCAG 75782 |||| | | |||||| ||| | | ||| |||| | || ||||| || ||| | Sbjct 446342 CATGGAAAGAGTTGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGG 446400 Query 75783 GTCTCTCCGACGCGGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTATGA-AGAGG 75839 | | || | ||| || || ||| |||| || || | ||||||| | | Sbjct 446401 GATTGCAAGATGTTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACA 446458 Query 75840 AGG--GTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCA-AAT 75896 ||| || || || ||| || | || ||| || || | || ||| | | Sbjct 446459 AGGCCGTGGAAGGAAAACGA-TGAA--AG-CGCAGAAACTTTGGTTCTTAATCTTACAGG 446514 Query 75897 CACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTA 75956 | || | ||||| || ||||||| ||| ||| || |||||| || | || |||| Sbjct 446515 CTCAAATTGAGACGGGGACACCATTTATTTGTTATAAAGATGCTGCAAATAGCAAAAGTA 446574 Query 75957 ACCAAAAGAATTTGGGAACAATCAAGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGT 76013 |||| || ||||||||||| || |||| | ||| ||||| ||||| |||| | Sbjct 446575 ACCAGAAAAATTTGGGAACTAT---TGTTTCAAGTAACTTATGCACAGAAATCATAGAAT 446631 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 |||| ||||| || || ||||| ||| |||| || || | ||||||||||| | Sbjct 446632 ACACTAGCAAGGACGAAGTTGCCGTTTGTAATCTGGCGTCTATTGGCCTTCCAAAGTTCG 446691 Query 76074 TCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTA 76133 | || || | | || ||||||| ||| || | | ||| | || ||| | ||| Sbjct 446692 TTGATAAAAATAACAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTA 446751 Query 76134 CCAAAAATCTAAACCGAGTCATTGAC---AGAAATTTTTATCCCGTTGAGACTGCGCGAA 76190 | | ||| | || | | |||||| || ||| | || | | ||| || || Sbjct 446752 CGAGGAATTTGAATAAATTGATTGACGTTGGATATTAT--TCTCTTAAAGAATG-TAAAA 446808 Query 76191 AGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGA-TGTATTT 76249 | || ||| | |||| | || | || | || ||||||| ||||| || ||| || Sbjct 446809 ACTCGAATTTAAGACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGT-TTC 446867 Query 76250 ATTTTGTGCCGCTACG-CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308 || || || || | ||| || || || | ||| ||| || | ||| | ||||| Sbjct 446868 ATGATGCTTCG-TATGCCATACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATCTT 446926 Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTC 76368 |||| || ||| | ||| | || || || || ||||| | || ||| | ||| | Sbjct 446927 TGAAGTTATCTATTATGCAGCTCTCGATGCTAGCTGTGAGCTTGCAGAAAAATATGGTCC 446986 Query 76369 CTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGA 76428 || || |||| | ||||| || ||| | || | | || ||||||||||||| Sbjct 446987 ATACGAAACATATTCCGGTTCGCCTGCGAGTAAGGGTATTTTACAATTTGATATGTGGGG 447046 Query 76429 AGGTGAAACCAAGCTC--AAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGA 76484 | || | |||| ||| || | || |||||| || || || | || | Sbjct 447047 A-GTTACACCAGACTCTGGACTTTGTGATTGGGATTCGCTTAAAGATAGGATTTCCAAAT 447105 Query 76485 AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCT 76544 | ||| ||||||| ||| ||||| | |||||||||||||| ||||| ||||||| | Sbjct 447106 ATGGTATTCGTAATTCTCTATTGATATCTCCAATGCCAACAGCATCCACTTCACAAATTT 447165 Query 76545 TGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCG 76604 | ||||| ||||| | ||||| |||| ||| | ||||| || | | || || Sbjct 447166 TAGGTAACAATGAGAGTTTTGAGCCATTCACCTCGAACATTTATCATCGTAGGGTACTAT 447225 Query 76605 CAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCT-CAAGAAGATTGGTCTC 76663 | |||||||| | | || || |||| | | ||||| | | || || |||| | Sbjct 447226 CTGGTGAGTTCTTTGTAGTAAATCCGCACTTGCTAAATGATTTACTAG-AGCTTGGGTTA 447284 Query 76664 TGG--TCCAAGG-ATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATAT- 76719 ||| | ||| || | || || | || | || || || ||||||||||| Sbjct 447285 TGGGATGATAGGCTTAAGCAGAATATTATTGCAAATAATGGCAGT---ATTCAAAATATA 447341 Query 76720 CTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAA 76779 || | | || || || ||||| | || || || || |||||||||||| || Sbjct 447342 CTTACA-ATTCCGGAGGATATACGTGAGCTTTATAAGACTGTATGGGAAATCAAG-CAAA 447399 Query 76780 AGA-TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA 76838 ||| || ||||| ||||| |||||| | |||| | || |||| ||| | ||| Sbjct 447400 AGACAGTAATTGATATGGCTGCAGATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGA 447459 Query 76839 --ATCTATTCATGGAAAGT-CCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGT 76895 ||| || ||||||| | | ||| || | ||| | || ||||||||| | || | | Sbjct 447460 ACATCCAT--ATGGAAAATGCTAACTTTG-CAAAGTTATCATCTATGCATTTTTATGGTT 447516 Query 76896 GGAAACAGGGGCTCAAAACCGGAATGTACTAT 76927 ||||| | || || ||||| || || || ||| Sbjct 447517 GGAAAAAAGGTCTAAAAACAGGCATTTATTAT 447548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569510514560