Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5 113 3e-20 >seq5 Length=1067107 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| |||||||||||||| ||||| | | || | | ||| || | |||||| || Sbjct 562350 GTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCT 562291 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | ||||| | ||| ||||| || || || || || || || || ||| |||| || Sbjct 562290 GCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTG-AATCTTTGCCTT 562232 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || ||| |||| ||||| | ||| ||||| || || || || || Sbjct 562231 AACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGT 562172 Query 29769 TTTAACAAATATCTGCATTTT 29789 |||||||| |||||||| || Sbjct 562171 CTTAACAAAAATCTGCATATT 562151 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| | || || |||||||||||||| || || | | || | | ||| || Sbjct 562590 ACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCT 562531 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| || ||| | ||||| | ||| ||||| || || || ||||| || ||||| Sbjct 562530 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTG- 562472 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| || ||| | || | || || ||| |||| ||||| | ||| ||||| || Sbjct 562471 AATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTT 562412 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| |||||||| Sbjct 562411 TCCTGTCAAAGTCTTGACAAAAATCTGCAT 562382 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| |||||||||||||| ||||| | | || | | ||| || | |||||| || Sbjct 562806 GTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCT 562747 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | ||||| | ||| ||||| || || || || || || || || ||| |||| || Sbjct 562746 GCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTG-AATCTTTGCCTT 562688 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || ||| |||| ||||| | ||| ||||| || || || || || Sbjct 562687 AACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGT 562628 Query 29769 TTTAACAAATATCTGCAT 29786 ||||| || |||||||| Sbjct 562627 CTTAACGAAAATCTGCAT 562610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219143661692