Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5 118 7e-22 >seq5 Length=1067107 Score = 118 bits (130), Expect = 7e-22 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | || || || |||| |||| ||||||||| ||||||||||| || Sbjct 562381 ACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGA 562322 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | || || ||||||||||| ||||| |||||||| || ||||| | || Sbjct 562321 GAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGG 562262 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||| || || | ||||| || | || || | ||| | Sbjct 562261 GATTCCTTCCTTATCCTGAATCTT-TGCCTTAACATTCTCAATTGTATCTGAAGGTTCAA 562203 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 | || | ||||| || || ||||| || || || ||||| ||||||||| ||| Sbjct 562202 CTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTG 562149 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | || || ||||||| ||| ||||||||| |||||||| || || Sbjct 562609 ACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGA 562550 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | || || ||||||||||| ||||| |||||||| || ||||| | || Sbjct 562549 GAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGG 562490 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| || || | ||||| || | || || | ||| | Sbjct 562489 GATTCCCTCCTTATCTTGAATCTT-TGCCTTAACATTCTCAATTGTATCTGAAGGTTCAA 562431 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || ||||| || || || ||||| ||||||||| Sbjct 562430 CTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCATA 562381 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || || |||| |||| ||||||||| ||||||||||| ||||| || | | || Sbjct 562821 AAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCC 562762 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || ||||||||||| ||||| |||||||| || ||||| | || | ||||| || || Sbjct 562761 TCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCC 562702 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||| || || | ||||| || | || || | ||| || || | ||||| || Sbjct 562701 TGAATCTT-TGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGT 562643 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||||| || || || || || ||||||||| Sbjct 562642 CTTTCCTGTCAAAGTCTTAACGAAAATCTGCATA 562609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703951927040