Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10 347 2e-90 >seq10 Length=1316356 Score = 347 bits (384), Expect = 2e-90 Identities = 1176/1818 (65%), Gaps = 34/1818 (2%) Strand=Plus/Minus Query 68412 ATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTT 68471 ||| || || || ||||| |||||| |||| || || ||||||||| || || || Sbjct 447548 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 447489 Query 68472 GGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCC 68531 | | | | | || | ||||| || |||| ||||| |||| | | | || Sbjct 447488 TGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACC 447429 Query 68532 TCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAAT 68591 |||||||| ||||| | || | ||||||| |||||||| | ||||||| ||| Sbjct 447428 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAG 447369 Query 68592 CTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAAT 68648 || ||||| || |||| | |||||||||| ||| || | ||||| Sbjct 447368 CTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAAT 447309 Query 68649 TATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGG 68708 | | ||| | | ||||| ||| || ||| |||| | | || | ||||| Sbjct 447308 ATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGG 447249 Query 68709 ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGG 68768 ||| |||| || || ||||||| || |||||| ||||| || ||| |||| Sbjct 447248 ATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGG 447189 Query 68769 TTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 || | | ||||| || || | |||||| | ||| ||||| |||||||| || | | Sbjct 447188 CTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATAT 447129 Query 68829 CAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCA 68888 ||||| | ||| | || ||||| | | || ||||||| || | |||||| || Sbjct 447128 CAATAGAGAATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACA 447069 Query 68889 AAGATCAGA---TGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATA 68945 ||| |||| |||| ||| ||| | ||| |||||| ||| || ||||| ||| Sbjct 447068 AAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGG 447009 Query 68946 TGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAA 69005 || || ||||||||| || || || | | ||| || || ||||| || || || | Sbjct 447008 CGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAG 446949 Query 69006 TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCT--AGACTA 69063 || | ||||| || ||| || || | ||||| | | | ||| | ||||| Sbjct 446948 AGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACT- 446890 Query 69064 TCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATA 69123 || |||| | | | | || || ||||| | || |||| ||||| || | Sbjct 446889 -CGTATGGCATACGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAAT 446831 Query 69124 GGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 69183 || | |||||| ||| || ||| | |||| || || |||||| || || || Sbjct 446830 GGACGATGTCTTAAATTCGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATC 446771 Query 69184 ATTTTATTAAGATT--TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAA 69241 | |||||| | ||| ||| | | || || || || |||| || |||||||| Sbjct 446770 AATTTATTCAAATTCCTCGTAATC--ACCTTCGTAACTTCTTTTAACTTATCAAAATCAA 446713 Query 69242 ATCGTCCATCTAT-------AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACT 69294 | |||| ||| ||| ||| | || | | ||| || ||||||||||| Sbjct 446712 A-CGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACG 446654 Query 69295 GCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATA 69354 || || || | | | |||| ||| || ||||| |||| ||||| | ||| Sbjct 446653 GCAACTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATA 446594 Query 69355 GTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGA 69414 || |||| ||||| ||| ||||| || | || || || || ||| |||||| || Sbjct 446593 GTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGT 446534 Query 69415 GTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACG 69474 || || || ||||| |||| | | || | ||||| | || || || || Sbjct 446533 GTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAAGTTTCTGCGCTTTCAT--CG 446476 Query 69475 GT---CTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCC 69531 | ||| | || | | ||| ||||| | | ||||||| | || ||||| ||| Sbjct 446475 TTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCC 446417 Query 69532 CAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCC 69591 |||||||| | |||||| ||||||| ||| ||||| | | ||| | | ||| | | Sbjct 446416 CAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTC 446357 Query 69592 TTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTA 69651 | ||||| || ||| || ||||| |||| |||||| || ||||||||| | ||| Sbjct 446356 TCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTC 446297 Query 69652 TTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCAT 69711 | ||||| ||||| ||| || ||| || | |||||| | || |||| |||||| Sbjct 446296 ATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCAT 446237 Query 69712 GGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTG 69771 ||||| | ||| || || ||| | || || || ||| || ||||| || || || Sbjct 446236 GGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTA 446177 Query 69772 GCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831 ||||||| |||||| || | |||||||||||| | ||||||||| | ||||||||||| Sbjct 446176 GCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCT 446117 Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATT 69891 |||||| || || | | ||||||||| | | | || | || ||||| | Sbjct 446116 CGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTC 446057 Query 69892 TTA--GAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTA 69949 ||| | || | ||| ||| | ||||||| | ||||| | ||| ||| ||| Sbjct 446056 TTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGAATCTTCTG 445999 Query 69950 TCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATG 70009 || | || | |||||| ||||||||| | | || || | |||||| | || Sbjct 445998 GAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTG 445939 Query 70010 TAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATT 70069 | || | ||| ||||| || |||||| || | || | |||||||||| || | || Sbjct 445938 TGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTT 445879 Query 70070 CTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 | ||||| |||| |||||| || | || ||||||| | ||| || |||| ||| Sbjct 445878 CAATATCACCAC-AATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCC 445820 Query 70129 ACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAG 70188 || ||| || | ||||| | || || ||| |||| |||||||| || ||||||| Sbjct 445819 ACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAA 445760 Query 70189 TTGTATGAAAAGTCTCTT 70206 | ||| ||| ||| || Sbjct 445759 TCATATTCAAAATCTTTT 445742 Score = 241 bits (266), Expect = 2e-58 Identities = 588/878 (67%), Gaps = 15/878 (2%) Strand=Plus/Plus Query 39302 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAA 39358 || ||||| |||| |||||||| |||| ||||||||||| | || ||||| || Sbjct 168194 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 168253 Query 39359 TTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt 39418 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| | || || Sbjct 168254 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 168313 Query 39419 ttttttttAA-ATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTT 39477 ||||| || |||| || | ||| |||||||| ||||||||||| || ||| Sbjct 168314 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 168372 Query 39478 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTT 39537 ||| | | | ||||| || || || | ||| || |||| || ||||| | | | Sbjct 168373 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 168432 Query 39538 TTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAA 39597 ||| | || || || |||| ||| || | |||| || || ||| | || Sbjct 168433 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACT--CTAGGAGCT-GGTAATTTAAA 168489 Query 39598 TAAATG---TTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAAT 39654 | | | |||| | ||||| || || |||||| ||| || || ||||| | |||||| Sbjct 168490 TTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAAT 168549 Query 39655 TAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGC 39714 | ||| ||||||||||||||||||||||| || ||||| ||||| |||||||| || || Sbjct 168550 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGC 168609 Query 39715 AGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTC 39773 | |||||| | |||||||| | || ||||| || || ||| ||| || ||| || Sbjct 168610 A-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 168668 Query 39774 CGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 | || | ||| || ||||| || |||||| || |||||||| || ||| Sbjct 168669 CAAAAGATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTT 168728 Query 39834 GCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTAT 39893 || || || | |||||| || ||| | | |||| ||| |||| ||| Sbjct 168729 CAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATATATCTAT 168788 Query 39894 CTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAA 39953 | || | | ||| |||| ||| || | |||||| | ||| ||||| | ||| Sbjct 168789 CAATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAAT 168848 Query 39954 AACATCTTGCTTCAGTAATTTGTACCTCT-GAACAAAATCTTTCCGCCAAATTTTCATTC 40012 | ||| ||||| | ||||||| ||| || |||| || | || || ||||| | Sbjct 168849 ACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATA 168907 Query 40013 ACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG 40072 || || |||||||| || ||||| ||||| || || | ||| ||||||| | ||||| | Sbjct 168908 ACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGG 168967 Query 40073 GGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 40132 | | | | | ||| || | |||||| || ||| | ||||||| |||| Sbjct 168968 TCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAA 169027 Query 40133 AACGACGCCTCTGCCTTTTTGTACATGTTCCATATATC 40170 || || || || || ||||| ||||| ||| ||||| Sbjct 169028 AATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 169065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908696963680