Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 158 3e-33 seq11 134 3e-26 >seq5 Length=1067107 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | ||| | ||| | ||||||||||||||| ||||| ||||| | || || || Sbjct 562372 AAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCT 562313 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||| || | || || ||||| ||||| | |||||||| ||||| || | |||||| Sbjct 562312 ACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTC 562253 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||| |||||| || || || || || || || || |||||| || | ||| Sbjct 562252 CTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGT 562193 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| |||||||| || | |||||| ||||| | |||||| || Sbjct 562192 GATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 562151 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | ||| | ||| | ||||||||||||||| ||||| ||||| | || || || Sbjct 562828 AAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCT 562769 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||| || | || || ||||| ||||| | |||||||| ||||| || | |||||| Sbjct 562768 ACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTC 562709 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||| |||||| || || || || || || || || |||||| || | ||| Sbjct 562708 CTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGT 562649 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || | |||||| || || | |||||| Sbjct 562648 GATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 562610 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| ||||||||||| ||||| || || | || || || ||||| || | || || || Sbjct 562579 AGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCC 562520 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||| ||||| | |||||||| ||||| || | ||| ||||| || || |||||| || Sbjct 562519 TGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTGAATCTTTGCCTT 562460 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || || || || || || |||||| || | |||||| |||||||| || | ||| Sbjct 562459 AACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGT 562400 Query 211097 CTTTACAAACACCTGCAT 211114 ||| ||||| | |||||| Sbjct 562399 CTTGACAAAAATCTGCAT 562382 >seq11 Length=1268624 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || | || | ||||||||| || ||||| || || || | || || || Sbjct 544498 AAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCT 544557 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||| ||||| || || ||||| || || ||||| |||||||||| || || Sbjct 544558 ACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCCCTC 544617 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| |||||||||||| || || || || || || || || |||||| || | || Sbjct 544618 CTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGT 544677 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| |||||||| || | ||| || ||||| | ||||| || Sbjct 544678 GATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 544719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151821780380