Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F002223825.1_202015-12- 11] 12 sequences; 9,068,851 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5 181 2e-40 seq11 147 5e-30 >seq5 Length=1067107 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | | ||| | |||||| || |||||||| ||||||||||||| Sbjct 562609 ACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGA 562550 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | |||||||||| |||||| || |||||||||||||||||||| ||| || Sbjct 562549 GAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGG 562490 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| ||||| |||||||| || || | || || || || |||| ||| || Sbjct 562489 GATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAAC 562430 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | |||||| ||||| || ||||||||||| || || |||||||| Sbjct 562429 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 562382 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| |||||||| |||||||| |||| || || | |||||||||| |||| Sbjct 562812 TGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGT 562753 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||||||||||||||| ||| || || || ||||| || || |||||| Sbjct 562752 TTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTT 562693 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || || || || |||| ||| ||||| | |||||| ||||| || ||| Sbjct 562692 GCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTC 562633 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 |||||||||||||| |||||||| Sbjct 562632 AAAGTCTTAACGAAAATCTGCAT 562610 Score = 174 bits (192), Expect = 3e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| |||||||| |||||||| |||| || || | |||||||||| |||| Sbjct 562356 TGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGT 562297 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||||||||||||||| ||| || || || ||||| || || |||||| Sbjct 562296 TTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTT 562237 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || || || || |||| ||| ||||| | |||||| ||||| || ||| Sbjct 562236 GCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTC 562177 Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102 ||||||||||| || |||||||| || Sbjct 562176 AAAGTCTTAACAAAAATCTGCATATT 562151 >seq11 Length=1268624 Score = 147 bits (162), Expect = 5e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||| | ||| || ||| || || ||||| |||||||||| || || | ||||| || Sbjct 544507 TACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTACCATCTTC 544566 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | ||| || || |||||||||| ||| ||||| ||| ||||| |||||||| || || Sbjct 544567 CAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCCCTCCTTATCCTG 544626 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||||||| ||||| | || ||||| || |||| ||| ||||| | ||||| ||||| Sbjct 544627 GATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGGTCTT 544686 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||| || || || || ||||| ||| Sbjct 544687 TCCTGTTAAAGTTTTGACAAAAATTTGCATCTTC 544720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739039063848