Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq37 118 2e-21 seq11 113 1e-19 >seq37 Length=17717 Score = 118 bits (130), Expect = 2e-21 Identities = 303/449 (67%), Gaps = 17/449 (4%) Strand=Plus/Minus Query 230198 TGTG-TGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAAC 230256 |||| ||| || || ||||| ||||| || || || || || || |||||||| || Sbjct 12984 TGTGCTGTCGAGGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT---AAA 12928 Query 230257 AAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGT 230313 ||| ||| | |||||||| ||| | ||||| || | || || || || || || Sbjct 12927 AAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGCCGTGATGAAGGC 12868 Query 230314 CTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAAC--AAGCTACCATTCG 230371 || ||| | || | | | ||| |||| || || | || || ||||| || Sbjct 12867 CTACATGCTGATTTTGCCT-GTTTA-GTATATAAGGCCCTTAAATTTAAATTACCAGTCC 12810 Query 230372 AGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACG 230431 | || |||||||||| ||||||| |||||| ||||| | || ||||||| Sbjct 12809 CTAGAGTGCAACAAATCATATCAGAAGCTGTTGAAGTCGAAAGAAACTTTCTTTGTGATT 12750 Query 230432 CTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTC 230490 || |||| ||| | |||||||| |||||| | |||||||| || || || ||||| Sbjct 12749 CTCTTCC-TGTTGATCTTATTGGTATGAACTCGAGACTTATGGCCCAATATATTGAATTT 12691 Query 230491 GTAGCCGACCGCATTTTTGTTGCACTTGGTTA--CGAGAAAGTGTACAACTCTAAGAACC 230548 || || ||| | | || | || ||||| | | | ||| | ||||| | || | Sbjct 12690 GTTGCTGACAGATTACTTTTCGC-CTTGGATGTTCCAAAAA-TCTACAAAGTTTCCAATC 12633 Query 230549 CCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTG 230608 | || | | ||||| |||||||| || || || ||||| ||||||||||||||| | | Sbjct 12632 CTTTCGATTGGATGGACCTCATTTCACTCCAGGGCAAGACTAACTTCTTCGAAAAGAGAG 12573 Query 230609 TCAGTGACTATCAGAGGCCTGGTGTGATG 230637 || | || ||||| | | |||| || ||| Sbjct 12572 TCGGAGAATATCAAATGGCTGGAGTCATG 12544 >seq11 Length=225008 Score = 113 bits (124), Expect = 1e-19 Identities = 312/465 (67%), Gaps = 14/465 (3%) Strand=Plus/Minus Query 281550 ATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAA 281609 || ||||| ||||||||| | |||| | || |||||| || ||||| ||| | | Sbjct 75616 ATATCTTTTGGATTATAATTAGGAACTGAACTACTCCAACCTGTACCAATTCCATCAGTA 75557 Query 281610 CCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCA 281669 |||||||||||||| | || || || ||||| ||| || |||||||||| | ||| Sbjct 75556 CCATTTACCAAAATCATTGGAATTATTGGTACGTAATATAAAGGTTCAATTTGTTGTCCA 75497 Query 281670 TCATCATACAAAT-ACTTCAGAAGGTTATCATCTGTATCGACGAAAACCTGTCGCGTC-- 281726 ||||||||||||| | || | || | |||||| | || ||||| | || ||| Sbjct 75496 TCATCATACAAATAAGTTAATAAAG-GATCATCAGCCTCTGGGAAAATATATCTAGTCCA 75438 Query 281727 TTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTG-GTCTTTACCACCCTGCAG 281785 || | | ||||| || || ||||| | ||| | | || ||||| ||||| | | Sbjct 75437 TTTAGAT--AGTTTAGTAAATATATAACGAGCA-GCACTTGCATCTTTTCCACCTTCCTT 75381 Query 281786 CCTCGACCCAAACTGACCCTCCGGCAACAACCAG-TTAATGTTATTGCTCCCGACGTAAT 281844 || ||||| ||||| ||| | | || || | ||||| || || || ||| Sbjct 75380 TCTACTACCAAATTGACCACATGGC-TCTAGTAGATTTAGATTATTACTTCCAACAAAAT 75322 Query 281845 CCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGT 281904 || |||| || || ||||| | || | ||| || || || ||||| || || | Sbjct 75321 TTTGTGCCATATTAACAATTGTACTTTGTAATGATGATTCTCCATGATGATAAGCACTAT 75262 Query 281905 GTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGA 281964 |||| |||||||||||| || ||||| | ||| | || | | ||| | ||| | Sbjct 75261 GTTCAGCAACATAACCAGCTAATTGTGC-AACTTTAAGTTCATTATTAAGCTTTTTTTTA 75203 Query 281965 AAG--CGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATC 282007 ||| |||| | | |||||||| ||| ||| || |||||||| Sbjct 75202 AAGGTTGCAA-AAAGTACTTTTCTTTGTCCAGGTTTTAAACCATC 75159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823227457910