Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq46 280 2e-70 seq37 179 4e-40 >seq46 Length=385502 Score = 280 bits (310), Expect = 2e-70 Identities = 1159/1814 (64%), Gaps = 32/1814 (2%) Strand=Plus/Minus Query 52846 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTT 52905 ||| || || || ||||||| ||| |||| || |||||||||||| || || || Sbjct 13939 ATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 13880 Query 52906 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 52965 | | || | | || | | |||||||| |||| |||||| |||| | | | || Sbjct 13879 TGCAAAATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACAAACATATGGACC 13820 Query 52966 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 53024 ||| ||||||||||| | || | |||||||| ||||||||||| ||| ||||||| Sbjct 13819 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 13760 Query 53025 CTCGCTTAATATCTTCTGGAAGGTT---TGTATTCTGAATAGATCCACCATCTACCATAA 53081 ||| | || |||| || || | | | |||| |||||| ||| || | | || | Sbjct 13759 CTCACGTA-TATCCTCCGGGATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATGA 13701 Query 53082 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 53141 | | | ||| | || ||||| |||||| || |||| | | || | ||||| Sbjct 13700 TATTCTGCTTAAGCTTATCATCCCATAACCCAAGTTCTAGTAAATCATTTAGTAAATGCG 13641 Query 53142 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG-TAAATATTACTGGTATAC 53200 |||| ||||| || || ||||| | ||| || || ||| ||||| || || | Sbjct 13640 GATTTACTACAAAGAACTCACCAGATAGTACCCTACG-GTGATAAATGTTTGAAGTGAAT 13582 Query 53201 GGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 53260 || || | | ||| || || || |||||||| | ||| || || || ||||| || | Sbjct 13581 GGCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGGAGGCTGTTGGCATTGGAGAT 13522 Query 53261 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 53320 | |||||| ||| | || ||| ||| | ||| ||||||| || | ||||||| Sbjct 13521 ATTAATAAAGAATTACGAATACCATATTTGGAAATTCTATCTTTAAGTGAATCCCAATCA 13462 Query 53321 CAAAGATCCGAC---GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCG 53377 ||||| | || || ||| ||||| |||||| ||||| || Sbjct 13461 CAAAGCCCTGAGTCTGGCGTAACTCCCCACATATCAAATTGTAAAATACCTTTACTTGCA 13402 Query 53378 TACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCT 53437 || || |||||| ||||||||||| | || || || || ||||| || || || Sbjct 13401 GGAGAACCATAATATGTTTCGTATGGTCCATATTTTTCCGCAAGCTCACAGCTAGCGTCA 13342 Query 53438 AATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA 53497 | || | ||||| ||| || ||||| | ||||| | | | ||| || Sbjct 13341 AGAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTTAGCTCCCTCCGAC 13282 Query 53498 TCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 53556 || |||| ||| ||| | ||||| ||| || | ||||||| ||||| || | Sbjct 13281 TCGTATGG-TAAACGAAGCATCATAAAACAGTCAGCGAGACCTTGAATGCCAATCCCCAA 13223 Query 53557 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 53616 || | ||| || ||| || ||| | |||| || || |||||| || || || Sbjct 13222 TGGACGATGCCTTAAATTCGATTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAAT 13163 Query 53617 AATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 53676 |||||||| | || || ||| || || || || || | || ||||||||| Sbjct 13162 TATTTTATTCAAATTCCTTGTAATCACCTTTGTAACTTCTTTTAACTTATCAAAATCAAA 13103 Query 53677 ----TTGTCCATCTATT--ACAAACATGTTCAATGC-AATAGATGCCAGATTACAAACGG 53729 |||| | | | |||||| | | || || |||||| |||||||||||||||| Sbjct 13102 CGTCTTGTTATTTTTGTCAACAAACTT-TGGAAGGCCAATAGACGCCAGATTACAAACGG 13044 Query 53730 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGG 53789 | || || | ||| | || | || || |||||||| | ||||| | || | Sbjct 13043 CAACTTCGTCCGCACTAGTGTACTCCATGATTTCAGTGCATAAGTTACTTGAGACAATAG 12984 Query 53790 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCG 53849 | || ||||||| |||||||| || | || ||||| |||||| ||| ||||| | Sbjct 12983 TACCCAAATTTTTCTGATTACTTTTACTATTTGCAGCATCTTTATAACAAATAAATGGTG 12924 Query 53850 TACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAG 53909 | || || ||||| || | | | || ||| | | || || || | Sbjct 12923 TTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCAAAGTTTCTGCGCTTTCATCGTT- 12865 Query 53910 ATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTC--AAACTCGTCTCCCCA 53967 || | | | | |||| ||| | | | | ||| ||| || || ||||| Sbjct 12864 -TTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAGTCATCACCCCA 12806 Query 53968 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 54027 ||||| | |||||| ||||||||||| ||||| | | ||| ||| | |||||| Sbjct 12805 AACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAGAGTCCAATCT---TGATCCTT 12749 Query 54028 C---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 |||| | ||| || |||||||||| ||| || || ||| ||||| | ||| Sbjct 12748 TTCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACATCT 12689 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || || ||| || ||| || | ||| | | || |||| ||||| Sbjct 12688 CATCTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCA 12629 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 54204 ||||||||| || || | || | || || || ||| || ||||| || || || Sbjct 12628 CGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCT 12569 Query 54205 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 54264 ||| |||| ||||||||| | |||||| ||||| | || ||||| ||||| ||||| Sbjct 12568 AGCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGTCCC 12509 Query 54265 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCAT 54324 ||||| ||| | | | ||||||||| | || | || | || ||||| | Sbjct 12508 TCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACTCCAAGGCCACCTGCAGT 12449 Query 54325 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 54384 ||| || ||||||| |||| || ||| | || || | ||| ||| || Sbjct 12448 CTTACTAATGTTTGCGCATTTAGTTAATGTGTCAAAAATACCGTTTATTGAATCTTCTGG 12389 Query 54385 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 54444 || | |||| |||||| |||||||| | || || || | |||||| | || Sbjct 12388 AATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCCTGAATTAAAGAGTGT 12329 Query 54445 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTC 54504 || | || || ||||| |||||| || | | | ||| ||||| | || | || Sbjct 12328 GGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCGTATGTCTCAAGTGCAGCTTC 12269 Query 54505 TATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 54563 ||||| ||| | ||||| || | || ||||| | | ||||| |||||||| | Sbjct 12268 AATATCACCACAG-TGAATCCCACAAGAAACCCGCATCAGAAGATGCTGTGGTCTTTCCA 12210 Query 54564 CGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 54623 | | ||||||| ||||| || | |||||| |||||| ||||| || ||||||| | Sbjct 12209 CAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCCAGGGTTTTGAAGGCAAAATAAT 12150 Query 54624 TGTATGAAAAGTCT 54637 ||| ||| ||| Sbjct 12149 CATATTCAAAATCT 12136 >seq37 Length=17717 Score = 179 bits (198), Expect = 4e-40 Identities = 562/853 (66%), Gaps = 18/853 (2%) Strand=Plus/Plus Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 |||| ||||| || || | |||||||| || ||||| || || | | ||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCA 23964 |||| ||||| | ||||||| ||| || |||||| || || |||| | ||| | Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTGTAGATTTTTGGAACATCCAAGGCGAAAAGTA 12677 Query 23965 ATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 24024 |||| || || ||||| || |||||| ||| | | | ||||| || ||||| | Sbjct 12678 ATCTGTCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAGTTCATACCAATAAGAT 12737 Query 24025 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 24084 ||| ||||||| || |||||| | | ||| | || || |||| ||| || Sbjct 12738 CAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATATGATT- 12796 Query 24085 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGT--TTAAACATCAAACATGCGAA 24142 | || | | | ||| | || | | || | ||| | | ||||| || || Sbjct 12797 -TGTTGCACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTTATATACTAAACAGGCAAA 12855 Query 24143 ATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 24201 ||| ||| ||||| || || || | ||||| | ||| || ||||| |||||||| |||| Sbjct 12856 ATCAGCA-TGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGTCCAGGCA 12914 Query 24202 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCT 24260 | || ||||| |||||||||||||| || | | |||| | | |||||||| | |||||| Sbjct 12915 TAAGTCCACGTTTTTTAAGCCAAAAAATTG-CACAAAAGCTACCAGAAAATAGAATTCCC 12973 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT-GTCATGTATCCACTT 24319 || || || || |||||| |||||| | || |||| || ||||| || Sbjct 12974 TCGACAGCACAGAATCCAATAATTCTTTCAGC-GAAAGATCGCTCAGAATTCATCCATTT 13032 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||| || |||||||| || || || || || | ||| || Sbjct 13033 AGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATATGAGAAATTGCTTCAAAAAGCAT 13092 Query 24380 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 24439 | ||| ||| | || | | |||| ||||||| | || ||| |||| ||| Sbjct 13093 TTGGCGTTCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGAATAAGTTTCACTATG 13152 Query 24440 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT-CTAGCCTCGGTAATCTGTACTT 24498 || | ||||| | ||||||||| | || | |||| || || || | || |||| || Sbjct 13153 TATTTGCTCAATAGACATTTGAAAAGCATA-ATACATCCTGGCTTCCGGTATTTGTATTT 13211 Query 24499 CTAT-ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557 || | | ||||| | |||| || ||||| | || || || ||||| || ||||| || Sbjct 13212 CTCTGAGAAAAT-TTACTGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAGAAT 13270 Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGA 24615 || || |||| ||| ||||||| |||||| ||| || || | | ||| || | | Sbjct 13271 GCTAAAACATATTTGATAAAATGTTTTTC--AGGGTCTTTAAGACTTTCCCAGTCTCTAA 13328 Query 24616 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 24675 |||| | | | ||| | |||||| |||||||||||| || ||||||||||||| Sbjct 13329 TATCATGACTCAGATCAATTTCTTCAGTAACCCAAAATGATGCTTCGGCCTTTTTATACA 13388 Query 24676 TATTCCAGATGTC 24688 | ||| ||||| Sbjct 13389 TCGACCAAATGTC 13401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721176973360