Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq45 134 2e-26 seq6 100 4e-16 >seq45 Length=133594 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | ||||| || ||||| ||| | || ||||| | Sbjct 54608 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 54667 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| |||| || || ||||||||||| ||||| || ||||||||||| Sbjct 54668 GATACTATCGAGAATGTTAAGGCA-AAGATTCAAGATAAGGAAGGAATTCCACCTGATCA 54726 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||||||||| |||||||||||| || |||| | ||||| || Sbjct 54727 ACAACGTTTGATCTTTGCAGGAAAGCAATTAGAGGATGGTAGAACCCTCTCTGATTACAA 54786 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || || || ||||| || || | | | |||||||| Sbjct 54787 CATTCAAAAAGAGTCTACCTTACATTTAGTATTGAGACTCAGGGGTGGTAT 54837 Score = 131 bits (144), Expect = 3e-25 Identities = 174/238 (73%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||| || || || ||| |||| |||| | Sbjct 55064 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAGACCATCACTTTAGAAGTTGAGCCTTCA 55123 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| |||| || || ||||||||||| ||||| || ||||||||||| Sbjct 55124 GATACTATCGAGAATGTTAAGGCA-AAGATTCAAGATAAGGAAGGAATTCCACCTGATCA 55182 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | ||||| || Sbjct 55183 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 55242 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAA 124774 ||||||||||| || ||||| || || || || | | |||| || || |||||| Sbjct 55243 CATTCAAAAAGAGTCCACTTTACACTTAGTATTGAGACTTAGAGGCGGAATGTAAAAA 55300 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || || || || ||| | || |||| | Sbjct 54836 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACCATCACTTTGGAAGTTGAGCCTTCA 54895 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| || |||| || || ||||||||||| || || |||||||||||||| Sbjct 54896 GATACAATTGAGAACGTTAAGGCA-AAGATTCAAGATAAGGAGGGGATACCACCTGATCA 54954 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | ||||| || Sbjct 54955 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 55014 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || || || ||||| || || | | | |||||||| Sbjct 55015 CATTCAAAAAGAGTCTACCTTACATTTAGTATTGAGACTCAGGGGTGGTAT 55065 >seq6 Length=322908 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || |||||||| || || || || | || ||||| | Sbjct 206857 ATGCAAATTTTTGTTAAAACTCTAACAGGGAAGACCATCACATTGGAAGTTGAACCTTCG 206916 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| || || || ||||| || || || || ||||||||| Sbjct 206917 GATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGATCAA 206976 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || ||||| ||||| ||||| || ||| | |||| || ||||| ||| Sbjct 206977 CAGCGTTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCAGAACTCTATCTGATTACAAT 207036 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || || || || |||||||| || || || | | |||||||| Sbjct 207037 ATCCAGAAGGAGTCCACTTTGCACTTAGTATTGAGACTTAGAGGTGGT 207084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455461737600